Schema for estOrientInfo
  Database: ornAna1    Primary Table: estOrientInfo    Row Count: 47,782   Data last updated: 2011-03-30
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Contig100357varchar(255) values Reference sequence chromosome or scaffold
chromStart 84int(10) unsigned range Start position in chromosome
chromEnd 170int(10) unsigned range End position in chromosome
name DW586460varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      ornAna1.all_est.qName (via estOrientInfo.name)
      ornAna1.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Contig10035784170DW58646000000
585Contig100357398498DW58651501300
585Contig100357398527DW58652801000
585Contig100357398600DW58686501000
585Contig100357398600DW58687801000
585Contig1009424072477DW58680000000
585Contig101541214313DW58689900000
585Contig101541214466DW58684200000
585Contig101541214502DW586483017000
585Contig101541214550DW58664900000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.