Schema for mrnaOrientInfo
  Database: ornAna1    Primary Table: mrnaOrientInfo    Row Count: 1,009   Data last updated: 2020-02-06
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Contig105822varchar(255) values Reference sequence chromosome or scaffold
chromStart 320int(10) unsigned range Start position in chromosome
chromEnd 577int(10) unsigned range End position in chromosome
name AY044182varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 22smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 47smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      ornAna1.all_mrna.qName (via mrnaOrientInfo.name)
      ornAna1.refFlat.name (via mrnaOrientInfo.name)
      ornAna1.refGene.name (via mrnaOrientInfo.name)
      ornAna1.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Contig105822320577AY0441820220470
585Contig108692203825895EU527853119000
585Contig111061923AY288074197000
585Contig1195810224704AF54518220000
585Contig1380236691038AB45333800000
585Contig143559345648AF525111161280
585Contig143559348694AF525095112000
585Contig143559362694AF525109090340
585Contig143559366643AF52509010000
585Contig143559379694AF52511610000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.