Schema for all_mrna
  Database: otoGar3    Primary Table: all_mrna    Row Count: 4   Data last updated: 2017-07-04
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 612smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 719int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 31int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName HM803976varchar(255) values Query sequence name
qSize 750int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 750int(10) unsigned range Alignment end position in query
tName GL873572varchar(255) values Target sequence name
tSize 12253515int(10) unsigned range Target sequence size
tStart 3656670int(10) unsigned range Alignment start position in target
tEnd 3657420int(10) unsigned range Alignment end position in target
blockCount 1int(10) unsigned range Number of blocks in alignment
blockSizes 750,longblob   Size of each block
qStarts 0,longblob   Start of each block in query.
tStarts 3656670,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      otoGar3.mrnaOrientInfo.name (via all_mrna.qName)
      otoGar3.xenoMrna.qName (via all_mrna.qName)
      otoGar3.xenoRefGene.name (via all_mrna.qName)
      otoGar3.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
61271903100000+HM8039767500750GL87357212253515365667036574201750,0,3656670,
59485911000073003+JF9676468700870GL8737302439756130283313067068133,119,115,88,87,143,150,35,0,133,252,367,455,542,685,835,1302833,1304682,1305060,1305253,1305465,1305643,1306383,1306671,
591850000000+MF19145585085GL87358111282559813404813489185,0,813404,
586800000000+MF19150380080GL8738051049950240328240408180,0,240328,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.