Schema for xenoRefFlat
  Database: oviAri1    Primary Table: xenoRefFlat    Row Count: 429,715   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName mylpfbvarchar(255) values Name of gene as it appears in genome browser.
name NM_001004668varchar(255) values Name of gene
chrom chr24varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 29140897int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 29141916int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 29140897int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 29141916int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 3int(10) unsigned range Number of exons
exonStarts 29140897,29141673,29141817,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 29140963,29141721,29141916,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      oviAri1.xenoMrna.qName (via xenoRefFlat.name)
      oviAri1.xenoRefGene.name (via xenoRefFlat.name)
      oviAri1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
mylpfbNM_001004668chr24+29140897291419162914089729141916329140897,29141673,29141817,29140963,29141721,29141916,
dtna.SNM_001091074chr23-236428932379983723642905237998281923642893,23644889,23647562,23650437,23650503,23652270,23652454,23652574,23652599,23662917,23671985,23680592,23712563,23718315,23 ...23642923,23645006,23647685,23650439,23650588,23652273,23652505,23652598,23652617,23663014,23672101,23680661,23712636,23718440,23 ...
AZIN2NM_001293724chr2-24675334424679207424675366924679110615246753344,246753611,246753782,246756915,246770279,246771847,246771971,246774524,246775521,246776645,246788991,246791001,24679112 ...246753588,246753781,246753809,246757127,246770393,246771971,246772009,246774690,246775656,246776818,246789165,246791118,24679118 ...
mrpl40NM_001303723chr17+78286360782874767828636078287476378286360,78287199,78287296,78286471,78287226,78287476,
Skiv2lNM_021337chr20-287853552879535328785355287953132128785355,28785651,28785971,28786868,28788074,28790111,28790698,28790876,28790927,28791355,28791654,28791871,28792394,28793026,28 ...28785556,28785792,28786102,28786997,28788215,28790234,28790801,28790926,28791024,28791462,28791739,28792017,28792457,28793068,28 ...
VPS4BNM_004869chr23-658930226591153065894469659115301865893022,65893134,65893206,65893591,65893819,65893995,65894274,65894469,65895912,65898561,65899151,65899611,65900172,65902711,65 ...65893112,65893196,65893214,65893790,65893859,65894016,65894389,65894571,65896053,65898781,65899233,65899759,65900330,65902831,65 ...
KCNJ3NM_205404chr11+37235375372358733723537537235873237235375,37235759,37235720,37235873,
GALK2NM_001030557chr7-638406226396111563840722639611151063840622,63840717,63848138,63849192,63882317,63890743,63892221,63945032,63957543,63961024,63840679,63840927,63848144,63849287,63882524,63890896,63892320,63945179,63957656,63961115,
ZNF619NM_173656chr17+47681496478234004768149647823400547681496,47776312,47782584,47823283,47823355,47681544,47776387,47782590,47823325,47823400,
luteNM_001260221chr18+72422032724236057242203272423605372422032,72422564,72423038,72422110,72422802,72423605,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.