Schema for xenoRefFlat
  Database: panPan3    Primary Table: xenoRefFlat    Row Count: 243,709   Data last updated: 2020-06-16
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName UBE2J2varchar(255) values Name of gene as it appears in genome browser.
name NM_001302433varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 8755int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 28656int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 10010int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 22829int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 7int(10) unsigned range Number of exons
exonStarts 8755,10851,11798,12014,1822...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 10295,10932,11937,12117,182...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      panPan3.xenoRefGene.name (via xenoRefFlat.name)
      panPan3.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
UBE2J2NM_001302433chr1-875528656100102282978755,10851,11798,12014,18220,22698,28491,10295,10932,11937,12117,18261,22829,28656,
UBE2J2NM_058167chr1-875528677100102282978755,10851,11798,12014,18220,22698,28491,10295,10932,11937,12117,18261,22829,28677,
UBE2J2NM_194315chr1-875528677100102282978755,10851,11798,12014,18220,22695,28491,10295,10932,11937,12117,18263,22829,28677,
UBE2J2NM_194457chr1-875528677100101823668755,10851,11798,12014,18220,28491,10295,10932,11937,12117,18261,28677,
UBE2J2NM_194458chr1-875528677100101823678755,10851,11798,12014,18220,22569,28491,10295,10932,11937,12117,18261,22829,28677,
Ube2j2NM_001007655chr1-9845286411001022831129845,9871,9995,10851,11798,12014,18220,22698,25969,28483,28533,28602,9860,9916,10295,10932,11937,12117,18261,22831,26029,28500,28581,28641,
Gm5801NR_002889chr1-987126014260142601489871,9995,10851,11798,12014,18220,22698,25969,9922,10295,10932,11937,12117,18261,22831,26014,
Ube2j2NM_001284312chr1-987126029100102283189871,9995,10851,11798,12014,18220,22698,25969,9922,10295,10932,11937,12117,18261,22831,26029,
Ube2j2NM_001039157chr1-9871286291001022831109871,9995,10851,11798,12014,18220,22698,25969,28507,28602,9922,10295,10932,11937,12117,18261,22831,26029,28581,28629,
Ube2j2NM_001039158chr1-9871286291001022829109871,9995,10851,11798,12014,18220,22698,28483,28511,28602,9922,10295,10932,11937,12117,18261,22831,28500,28581,28629,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.