Schema for estOrientInfo
  Database: panTro1    Primary Table: estOrientInfo    Row Count: 19,062   Data last updated: 2016-04-16
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 631smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 6110978int(10) unsigned range Start position in chromosome
chromEnd 6124155int(10) unsigned range End position in chromosome
name AU298520varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      panTro1.all_est.qName (via estOrientInfo.name)
      panTro1.est.qName (via estOrientInfo.name)
      panTro1.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
631chr161109786124155AU29852030000
631chr161110406122315AU29773420000
631chr161110876122317AU29840020000
631chr161111956124154AU29685430000
652chr188677888876343AU29858750000
652chr188678878876343AU29791950000
652chr188685548876343AU29785740000
652chr188686508876343AU29759330000
652chr188694108876343AU297247200170
652chr188718878876343AU29754211000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.