Schema for estOrientInfo
  Database: panTro2    Primary Table: estOrientInfo    Row Count: 17,695   Data last updated: 2016-07-11
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 632smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 6231125int(10) unsigned range Start position in chromosome
chromEnd 6245068int(10) unsigned range End position in chromosome
name AU298520varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      panTro2.all_est.qName (via estOrientInfo.name)
      panTro2.est.qName (via estOrientInfo.name)
      panTro2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
632chr162311256245068AU29852030000
632chr162311876243228AU29773420000
632chr162312346243230AU29840020000
632chr162313426245067AU29685430000
653chr189745408983095AU29858750000
653chr189746398983095AU29791950000
653chr189753068983095AU29785740000
653chr189754028983095AU29759330000
653chr189761628983095AU297247200170
653chr189761858983095AU29835830000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.