Schema for all_est
  Database: petMar1    Primary Table: all_est    Row Count: 120,304   Data last updated: 2011-03-30
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 303int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 6int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AA618657varchar(255) values Query sequence name
qSize 350int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 312int(10) unsigned range Alignment end position in query
tName Contig12583varchar(255) values Target sequence name
tSize 18362int(10) unsigned range Target sequence size
tStart 11461int(10) unsigned range Alignment start position in target
tEnd 11772int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 275,36,longblob   Size of each block
qStarts 38,314,longblob   Start of each block in query.
tStarts 11461,11736,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      petMar1.all_mrna.qName (via all_est.qName)
      petMar1.estOrientInfo.name (via all_est.qName)
      petMar1.intronEst.qName (via all_est.qName)
      petMar1.xenoMrna.qName (via all_est.qName)
      petMar1.xenoRefGene.name (via all_est.qName)
      petMar1.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5853032061100-AA6186573500312Contig125831836211461117722275,36,38,314,11461,11736,
58528614406700+AA6186513590338Contig1285119516787082017113,138,43,21,4,4,8,0,114,253,297,319,325,330,7870,7983,8121,8164,8185,8189,8193,
5851133352200-AA618652346176302Contig135162254010921216311,78,35,44,56,135,1092,1103,1181,
585168204147180+AA61864628748226Contig1733120038135371389184,6,4,7,11,62,56,24,48,52,58,62,69,80,142,202,13537,13542,13549,13554,13562,13574,13809,13867,
585163001113119+AA61864725145210Contig1733120038138111409457,8,66,50,33,45,52,60,126,177,13811,13819,13828,14011,14061,
5852442034552293-AA6186492910254Contig279821329375321007495,24,42,100,37,13,11,7,10,37,44,69,112,212,250,263,274,281,7532,7537,7561,7603,9991,10030,10044,10056,10064,
5852451034552290+AA6186492910254Contig2809113752764110180910,7,11,13,37,100,44,22,5,0,10,17,28,42,79,180,225,249,7641,7652,7660,7672,7687,10009,10109,10153,10175,
5852702030022-AA6186553179284Contig298641578014385146623252,18,5,33,285,303,14385,14638,14657,
585124102004176-AA61864522883210Contig33621827441844487526,68,11,9,13,18,44,112,123,132,4184,4382,4451,4463,4474,
585163001113119-AA61864725145210Contig3931312291005410337534,49,66,8,7,41,76,125,191,199,10054,10088,10254,10321,10330,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.