Schema for estOrientInfo
  Database: ponAbe3    Primary Table: estOrientInfo    Row Count: 50,531   Data last updated: 2018-03-29
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 3477int(10) unsigned range Start position in chromosome
chromEnd 17837int(10) unsigned range End position in chromosome
name CR791558varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      ponAbe3.all_est.qName (via estOrientInfo.name)
      ponAbe3.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr1347717837CR79155820000
585chr16673766943CR78719200000
585chr16704968964CR76553520000
585chr19765798627CR53911710000
591chr1907281907912CR54242700000
591chr1907342907771CR76610000000
592chr1952480952909CR76610000000
595chr113420901342756CR54302600000
596chr114670791467508CR76610000000
596chr114678581468369CR54099400000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.