Schema for all_est
  Database: priPac1    Primary Table: all_est    Row Count: 42,452   Data last updated: 2016-04-16
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 442int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 434int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AA193982varchar(255) values Query sequence name
qSize 450int(10) unsigned range Query sequence size
qStart 7int(10) unsigned range Alignment start position in query
qEnd 449int(10) unsigned range Alignment end position in query
tName chrUnvarchar(255) values Target sequence name
tSize 174852139int(10) unsigned range Target sequence size
tStart 46550int(10) unsigned range Alignment start position in target
tEnd 47426int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 286,89,67,longblob   Size of each block
qStarts 1,287,376,longblob   Start of each block in query.
tStarts 46550,47117,47359,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      priPac1.all_mrna.qName (via all_est.qName)
      priPac1.estOrientInfo.name (via all_est.qName)
      priPac1.intronEst.qName (via all_est.qName)
      priPac1.xenoMrna.qName (via all_est.qName)
      priPac1.xenoRefGene.name (via all_est.qName)
      priPac1.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585442000002434-AA1939824507449chrUn17485213946550474263286,89,67,1,287,376,46550,47117,47359,
586440407152900+AA1920214560456chrUn1748521391978451991963248,66,137,0,253,319,197845,198575,199059,
605422202008298+AA1920644740426chrUn17485213927125372713261930,105,60,27,164,18,5,10,7,0,30,135,195,222,386,404,409,419,2712537,2712643,2712852,2712914,2713053,2713218,2713237,2713243,2713254,
60919914952331077-AA1938882570257chrUn17485213932383953239726513,95,42,37,67,0,13,110,152,190,3238395,3238592,3238690,3239622,3239659,
618591403116798-AA1937215990599chrUn17485213943892324390628746,85,84,67,77,111,128,0,47,132,216,283,360,471,4389232,4389281,4389608,4389854,4390102,4390331,4390500,
6204503011514-AA1939154690459chrUn174852139461113546115932111,343,10,126,4611135,4611250,
622363000004757+AA1939473660363chrUn17485213949778694978989531,66,69,13,184,0,31,97,166,179,4977869,4978355,4978568,4978638,4978805,
626277003112124-AA1162013220281chrUn17485213954078695408273417,155,101,7,41,59,214,315,5407869,5407886,5408098,5408266,
6264901002259-AA1918355310493chrUn17485213954191535419653610,20,22,43,41,355,38,49,70,92,135,176,5419153,5419166,5419189,5419212,5419256,5419298,
6292770010000-AA1938862910278chrUn174852139577000357702811278,13,5770003,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.