Schema for estOrientInfo
  Database: rheMac3    Primary Table: estOrientInfo    Row Count: 62,204   Data last updated: 2012-11-06
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1111smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 68986994int(10) unsigned range Start position in chromosome
chromEnd 69000979int(10) unsigned range End position in chromosome
name AB471888varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      rheMac3.all_est.qName (via estOrientInfo.name)
      rheMac3.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1111chr16898699469000979AB47188830000
1111chr16898699469000979AB47188940000
1432chr1111031907111032129AF15945000000
683chr111290379912903959AF07512600000
778chr122530928525309564AF13902700000
984chr125238849352388746AF14888500000
984chr125242234452422912AF14028700000
1254chr128774766787748149AF14029200006
1530chr14123878552123878750AF159161000190
860chr153616250436162890AF07512300000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.