Schema for knownBlastTab
  Database: rn3    Primary Table: knownBlastTab    Row Count: 362,563   Data last updated: 2004-04-06
Format description: Blast alignments to other proteins from this species.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB000098varchar(255) values Name of sequence in this assembly (query)
target AB000098varchar(255) values Name of sequence in other assembly (target)
identity 100float range Percent identity
aliLength 458int(10) unsigned range Length of alignment
mismatch 0int(10) unsigned range Number of mismatches
gapOpen 0int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 458int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 458int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 847.4double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via knownBlastTab.query)
      knownGeneV39.ceBlastTab.query (via knownBlastTab.query)
      knownGeneV39.dmBlastTab.query (via knownBlastTab.query)
      knownGeneV39.drBlastTab.query (via knownBlastTab.query)
      knownGeneV39.foldUtr3.name (via knownBlastTab.query)
      knownGeneV39.foldUtr5.name (via knownBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via knownBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via knownBlastTab.query)
      knownGeneV39.kgAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgColor.kgID (via knownBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via knownBlastTab.query)
      knownGeneV39.kgXref.kgID (via knownBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via knownBlastTab.query)
      knownGeneV39.knownBlastTab.query (via knownBlastTab.query)
      knownGeneV39.knownBlastTab.target (via knownBlastTab.query)
      knownGeneV39.knownCanonical.protein (via knownBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via knownBlastTab.query)
      knownGeneV39.knownCds.name (via knownBlastTab.query)
      knownGeneV39.knownGene.name (via knownBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via knownBlastTab.query)
      knownGeneV39.knownGenePep.name (via knownBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via knownBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via knownBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via knownBlastTab.query)
      knownGeneV39.knownToHprd.name (via knownBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via knownBlastTab.query)
      knownGeneV39.knownToMrna.name (via knownBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via knownBlastTab.query)
      knownGeneV39.knownToMupit.name (via knownBlastTab.query)
      knownGeneV39.knownToPfam.name (via knownBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via knownBlastTab.query)
      knownGeneV39.knownToSuper.gene (via knownBlastTab.query)
      knownGeneV39.knownToTag.name (via knownBlastTab.query)
      knownGeneV39.knownToU133.name (via knownBlastTab.query)
      knownGeneV39.knownToU95.name (via knownBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via knownBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via knownBlastTab.query)
      knownGeneV39.mmBlastTab.query (via knownBlastTab.query)
      knownGeneV39.rnBlastTab.query (via knownBlastTab.query)
      knownGeneV39.scBlastTab.query (via knownBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via knownBlastTab.query)
      rn3.dmBlastTab.query (via knownBlastTab.query)
      rn3.drBlastTab.query (via knownBlastTab.query)
      rn3.dupSpMrna.mrnaID (via knownBlastTab.query)
      rn3.gnfAtlas2Distance.query (via knownBlastTab.query)
      rn3.gnfAtlas2Distance.target (via knownBlastTab.query)
      rn3.hgBlastTab.query (via knownBlastTab.query)
      rn3.keggPathway.kgID (via knownBlastTab.query)
      rn3.kgAlias.kgID (via knownBlastTab.query)
      rn3.kgProtAlias.kgID (via knownBlastTab.query)
      rn3.kgSpAlias.kgID (via knownBlastTab.query)
      rn3.kgXref.kgID (via knownBlastTab.query)
      rn3.knownCanonical.transcript (via knownBlastTab.query)
      rn3.knownGene.name (via knownBlastTab.query)
      rn3.knownGeneLink.name (via knownBlastTab.query)
      rn3.knownGeneMrna.name (via knownBlastTab.query)
      rn3.knownGenePep.name (via knownBlastTab.query)
      rn3.knownIsoforms.transcript (via knownBlastTab.query)
      rn3.knownToEnsembl.name (via knownBlastTab.query)
      rn3.knownToGnfAtlas2.name (via knownBlastTab.query)
      rn3.knownToLocusLink.name (via knownBlastTab.query)
      rn3.knownToPfam.name (via knownBlastTab.query)
      rn3.knownToRefSeq.name (via knownBlastTab.query)
      rn3.knownToSuper.gene (via knownBlastTab.query)
      rn3.scBlastTab.query (via knownBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB000098AB00009810045800045804580847.4
AB000098BC05913485.716390395458451083.8e-26114.4
AB000098BC05913498.2858100580581.2e-24109.4
AB000098X1380423.7724416471684084767020.000001549.29
AB000098X1380422.1723016071754026128260.0005340.82
AB000098X1380421.8227518391754223586290.00140.05
AB000098AY11289722.9524416671684081593850.00003744.67
AB000098AY11289722.1723016071754022955090.000441.2
AB000098AY11289721.822751839175422413120.00238.89
AB000098AF03187922.9524416671684087179430.00004844.28

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.