Schema for estOrientInfo
  Database: rn6    Primary Table: estOrientInfo    Row Count: 1,270,132   Data last updated: 2016-07-05
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 595smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 1388970int(10) unsigned Start position in chromosome
chromEnd 1389361int(10) unsigned End position in chromosome
name AA964125varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      rn6.all_est.qName (via estOrientInfo.name)
      rn6.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
595chr113889701389361AA96412500000
597chr116831291684063AA87492600000
597chr116831451683524AA859893000020
597chr116831711683505AA85030700000
597chr116843901684727AA851694000020
598chr117304111730800AA68604700000
598chr117305071730912AA68547700000
598chr117306271731209AA94366500000
598chr117306571730898AA685245000200
598chr117309541731209AA68560000000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.