Schema for estOrientInfo
  Database: sacCer3    Primary Table: estOrientInfo    Row Count: 34,991   Data last updated: 2012-05-25
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrIvarchar(255) values Reference sequence chromosome or scaffold
chromStart 51171int(10) unsigned range Start position in chromosome
chromEnd 51633int(10) unsigned range End position in chromosome
name AA417479varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      sacCer3.all_est.qName (via estOrientInfo.name)
      sacCer3.est.qName (via estOrientInfo.name)
      sacCer3.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chrI5117151633AA41747900000
586chrI146592147055AA41748000000
586chrI160868161254AA417481000018
586chrI187940188227AA41747700000
587chrII315422315872AA41752900000
587chrII382322382671AA41745000000
588chrII492467492521AA41746600000
590chrII731444731521AA41744900000
590chrII768593768921AA41747500000
586chrIII138321138769AA41744800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.