Schema for rnBlastTab
  Database: sacCer3    Primary Table: rnBlastTab    Row Count: 1,795   Data last updated: 2012-02-17
Format description: Blast alignments of Rat genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query YMR314Wvarchar(255) values Name of sequence in this assembly (query)
target RGD:61841varchar(255) values Name of sequence in other assembly (target)
identity 53.19float range Percent identity
aliLength 235int(10) unsigned range Length of alignment
mismatch 107int(10) unsigned range Number of mismatches
gapOpen 2int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 234int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 233int(10) unsigned range End in target (non-inclusive)
eValue 4e-65double range Expectation value
bitScore 243double range Bit score

Connected Tables and Joining Fields
        sacCer3.ceBlastTab.query (via rnBlastTab.query)
      sacCer3.choExpDistance.query (via rnBlastTab.query)
      sacCer3.choExpDistance.target (via rnBlastTab.query)
      sacCer3.dmBlastTab.query (via rnBlastTab.query)
      sacCer3.drBlastTab.query (via rnBlastTab.query)
      sacCer3.esRegGeneToModule.gene (via rnBlastTab.query)
      sacCer3.esRegGeneToMotif.gene (via rnBlastTab.query)
      sacCer3.esRegUpstreamRegion.name (via rnBlastTab.query)
      sacCer3.hgBlastTab.query (via rnBlastTab.query)
      sacCer3.mmBlastTab.query (via rnBlastTab.query)
      sacCer3.sgdBlastTab.query (via rnBlastTab.query)
      sacCer3.sgdBlastTab.target (via rnBlastTab.query)
      sacCer3.sgdCanonical.transcript (via rnBlastTab.query)
      sacCer3.sgdDescription.name (via rnBlastTab.query)
      sacCer3.sgdGene.name (via rnBlastTab.query)
      sacCer3.sgdIsoforms.transcript (via rnBlastTab.query)
      sacCer3.sgdPep.name (via rnBlastTab.query)
      sacCer3.sgdToName.name (via rnBlastTab.query)
      sacCer3.sgdToSwissProt.name (via rnBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
YMR314WRGD:6184153.192351072023402334e-65243
YMR311CRGD:62109927.911729183820111490.000440.4
YMR309CRGD:130887130.62552345122567943298571e-58224
YMR310CRGD:156351424.6219911611113300372140.00338.1
YMR304WRGD:130691529.91154610303811726810432e-123439
YMR292WRGD:131069142.5710158029130301310.0000000153.9
YMR293CRGD:135949033.33432256643457674858e-55210
YMR301CRGD:130308649.585932884896741187081e-165578
YMR290CRGD:154971264.564431561484911896311e-161565
YMR300CRGD:62023733.14507297131485114993e-61231

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.