Schema for all_mrna
  Database: sarHar1    Primary Table: all_mrna    Row Count: 205   Data last updated: 2017-06-13
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 292int(10) unsigned range Number of bases that match that aren't repeats
misMatches 17int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 173int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName KP284829varchar(255) values Query sequence name
qSize 375int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 309int(10) unsigned range Alignment end position in query
tName chr1_GL834780_randomvarchar(255) values Target sequence name
tSize 277683int(10) unsigned range Target sequence size
tStart 231564int(10) unsigned range Alignment start position in target
tEnd 232046int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 14,295,longblob   Size of each block
qStarts 0,14,longblob   Start of each block in query.
tStarts 231564,231751,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      sarHar1.mrnaOrientInfo.name (via all_mrna.qName)
      sarHar1.refGene.name (via all_mrna.qName)
      sarHar1.refSeqAli.qName (via all_mrna.qName)
      sarHar1.xenoMrna.qName (via all_mrna.qName)
      sarHar1.xenoRefGene.name (via all_mrna.qName)
      sarHar1.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5862921700001173+KP2848293750309chr1_GL834780_random277683231564232046214,295,0,14,231564,231751,
5863242000001169+KP2848243840344chr1_GL834780_random277683246504247017249,295,0,49,246504,246722,
586924000000+KP284817384231327chr1_GL834780_random277683261550261646196,231,261550,
585309300001201-KP2848103750312chr1_GL834782_random219444947082475952296,16,63,359,47082,47579,
585334700001201-KP2848113846347chr1_GL834782_random219444947082476242298,43,37,335,47082,47581,
585334700001201-KP2848123846347chr1_GL834782_random219444947082476242298,43,37,335,47082,47581,
585344300001201-KP2848133840347chr1_GL834782_random219444947082476302296,51,37,333,47082,47579,
585344300001201-KP2848143840347chr1_GL834782_random219444947082476302296,51,37,333,47082,47579,
585342401001201-KP2848153840347chr1_GL834782_random219444947082476302296,51,37,333,47082,47579,
5851601000351354896+KP284825384162383chr1_GL834782_random219444971426126492436,59,39,36,162,228,292,347,71426,71492,71556,126456,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.