Schema for all_est
  Database: speTri2    Primary Table: all_est    Row Count: 5,102   Data last updated: 2012-06-11
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 534int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 1762int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName CX624358varchar(255) values Query sequence name
qSize 618int(10) unsigned range Query sequence size
qStart 71int(10) unsigned range Alignment start position in query
qEnd 607int(10) unsigned range Alignment end position in query
tName AGTP01134759varchar(255) values Target sequence name
tSize 18282int(10) unsigned range Target sequence size
tStart 15984int(10) unsigned range Alignment start position in target
tEnd 18282int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 133,135,96,172,longblob   Size of each block
qStarts 11,144,279,375,longblob   Start of each block in query.
tStarts 15984,16662,16919,18110,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      speTri2.all_mrna.qName (via all_est.qName)
      speTri2.estOrientInfo.name (via all_est.qName)
      speTri2.intronEst.qName (via all_est.qName)
      speTri2.xenoRefGene.name (via all_est.qName)
      speTri2.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5855342000031762-CX62435861871607AGTP011347591828215984182824133,135,96,172,11,144,279,375,15984,16662,16919,18110,
58599002153181-CX6245391060106AGTP01134759182821673217014417,45,33,6,0,22,67,100,16732,16752,16919,17008,
58586001112178-CX624010450088AGTP01134759182821674917014440,8,33,6,362,403,411,444,16749,16789,16919,17008,
5854932300182696-CX6245975380524AGTP011422095853221034223260,224,32,14,274,506,2210,3036,3390,
58548322046163698-CX6241786260525AGTP01142209585322933500814,55,6,43,58,224,27,82,101,116,172,180,225,283,516,544,2293,2307,2362,2368,2412,3036,3391,3418,
5852763010441122-CX6245982930293AGTP01142209585331003511614,9,19,115,22,110,0,15,25,45,160,183,3100,3114,3123,3142,3379,3401,
5857040000000-CX6251117110704AGTP011456173892189826021704,7,1898,
5852763010441122-CX6245982930293AGTP011470743265512923614,9,21,113,22,110,0,15,25,47,160,183,512,526,535,556,791,813,
5851314000000+CX72781279690225AGTP0115080712526908251135,90,690,
5851133002616+CX62527263253175AGTP0115290110200122326,4,86,53,80,89,0,26,36,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.