Schema for all_est
  Database: strPur2    Primary Table: all_est    Row Count: 201,064   Data last updated: 2016-04-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 340int(10) unsigned range Number of bases that match that aren't repeats
misMatches 3int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 8int(10) unsigned range Number of 'N' bases
qNumInsert 7int(10) unsigned range Number of inserts in query
qBaseInsert 19int(10) unsigned range Number of bases inserted in query
tNumInsert 5int(10) unsigned range Number of inserts in target
tBaseInsert 2640int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AF122756varchar(255) values Query sequence name
qSize 612int(10) unsigned range Query sequence size
qStart 56int(10) unsigned range Alignment start position in query
qEnd 426int(10) unsigned range Alignment end position in query
tName Scaffold1varchar(255) values Target sequence name
tSize 640699int(10) unsigned range Target sequence size
tStart 121922int(10) unsigned range Alignment start position in target
tEnd 124913int(10) unsigned range Alignment end position in target
blockCount 10int(10) unsigned range Number of blocks in alignment
blockSizes 6,17,6,4,6,56,44,16,185,11,longblob   Size of each block
qStarts 186,193,211,219,224,232,293...longblob   Start of each block in query.
tStarts 121922,121928,121945,121951...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      strPur2.all_mrna.qName (via all_est.qName)
      strPur2.estOrientInfo.name (via all_est.qName)
      strPur2.intronEst.qName (via all_est.qName)
      strPur2.refGene.name (via all_est.qName)
      strPur2.refSeqAli.qName (via all_est.qName)
      strPur2.xenoMrna.qName (via all_est.qName)
      strPur2.xenoRefGene.name (via all_est.qName)
      strPur2.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58534030871952640-AF12275661256426Scaffold1640699121922124913106,17,6,4,6,56,44,16,185,11,186,193,211,219,224,232,293,337,360,545,121922,121928,121945,121951,121955,121962,122021,124693,124713,124902,
585317300122414-AF12224334422344Scaffold101201476620966943329,119,172,0,29,150,66209,66651,66771,
585600000000-AF12263868771131Scaffold100151201644704160,556,644,
585881000000+AF122438474273362Scaffold10082358258147189,273,58,
5853601501300218+AF1226288327395Scaffold10087358104063272,72,44,7,279,351,0,289,362,
585620000000+AF12263868769131Scaffold10123885153215162,69,153,
58511020111238+AF122171100070195Scaffold10127257437350444,33,28,58,70,74,109,137,373,378,417,446,
585590001582372-AF122301932542659Scaffold104183549415578156212310,19,30,273,283,360,55781,56150,56182,
586382703410511325-AF1225056810402Scaffold1041952538517601518773277,9,17,91,57,168,43,279,290,302,320,413,470,638,176015,176023,176033,176050,176142,177056,187689,
585600000000-AF12263868771131Scaffold104261056073190931969160,556,31909,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.