Schema for xenoRefFlat
  Database: strPur2    Primary Table: xenoRefFlat    Row Count: 210,668   Data last updated: 2020-09-01
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName rhogavarchar(255) values Name of gene as it appears in genome browser.
name NM_001082804varchar(255) values Name of gene
chrom Scaffold36454varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 11685int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 15209int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 11685int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 15209int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 5int(10) unsigned range Number of exons
exonStarts 11685,12690,13458,14269,15174,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 11790,12738,13575,14342,15209,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      strPur2.xenoMrna.qName (via xenoRefFlat.name)
      strPur2.xenoRefGene.name (via xenoRefFlat.name)
      strPur2.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
rhogaNM_001082804Scaffold36454-11685152091168515209511685,12690,13458,14269,15174,11790,12738,13575,14342,15209,
Dyrk1bNM_001271370Scaffold74624-51410169514101695514,2048,2896,3564,9980,637,2198,3183,3712,10169,
Rpl10NM_001136122Scaffold57312+2805602846392805632846395280560,281703,282143,282867,284522,280587,281761,282390,283030,284639,
Rps3aNM_001136121Scaffold22378+286345842863458142863,3046,3662,4521,3019,3073,3758,4584,
MYT1NM_001192062Scaffold83184+1973232013231973232013233197323,199279,201239,197385,199310,201323,
MYT1NM_001192062Scaffold83184+1973232037501973232037505197323,199279,201239,202686,203633,197385,199295,201329,202770,203750,
MYT1NM_001192062Scaffold83184+2012392027822012392027822201239,202686,201329,202782,
RPL26L1NM_001317982Scaffold81736+247831422481314222478,2998,2649,3142,
RPL26L1NM_001317981Scaffold81736+247831422481314222478,2998,2649,3142,
RPL26L1NM_001317980Scaffold81736+247831422481314222478,2998,2649,3142,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.