Schema for all_est
  Database: taeGut2    Primary Table: all_est    Row Count: 92,026   Data last updated: 2014-04-17
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 513int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 53int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 3int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 5int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName CK301502varchar(255) values Query sequence name
qSize 582int(10) unsigned range Query sequence size
qStart 11int(10) unsigned range Alignment start position in query
qEnd 582int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 118548696int(10) unsigned range Target sequence size
tStart 22084int(10) unsigned range Alignment start position in target
tEnd 22657int(10) unsigned range Alignment end position in target
blockCount 6int(10) unsigned range Number of blocks in alignment
blockSizes 174,211,25,86,35,37,longblob   Size of each block
qStarts 11,185,396,422,509,545,longblob   Start of each block in query.
tStarts 22084,22260,22472,22497,225...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      taeGut2.all_mrna.qName (via all_est.qName)
      taeGut2.estOrientInfo.name (via all_est.qName)
      taeGut2.intronEst.qName (via all_est.qName)
      taeGut2.refGene.name (via all_est.qName)
      taeGut2.refSeqAli.qName (via all_est.qName)
      taeGut2.xenoRefGene.name (via all_est.qName)
      taeGut2.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58551325303335+CK30150258211582chr111854869622084226576174,211,25,86,35,37,11,185,396,422,509,545,22084,22260,22472,22497,22585,22620,
58970311000042706-CK3108117140714chr1118548696632048635468575,81,82,175,301,0,75,156,238,413,632048,633223,633557,634125,635167,
5897377001152741-CK31708477631776chr11185486966351796386646372,45,89,38,96,104,0,373,418,507,545,641,635179,635606,636880,637199,638024,638560,
589662111464911+CK3156527020702chr1118548696653324654018565,129,149,135,215,0,67,197,348,487,653324,653390,653519,653668,653803,
5905592019231311+CK3024817770777chr11185486967104267112012167,607,0,170,710426,710594,
590650729035438+CK31161576911751chr11185486967111787118725157,37,125,66,301,11,168,207,367,450,711178,711337,711375,711505,711571,
5903190000012704+CK3098095940319chr1118548696736056739079262,257,0,62,736056,738822,
5902422000000-CK30159130447291chr11185486967556197558631244,13,755619,
59363120036141293+CK30319573928722chr1118548696109714310990698164,121,35,32,50,39,90,102,28,192,313,402,435,491,530,620,1097143,1097768,1097981,1098016,1098048,1098098,1098343,1098967,
600651060000-CK303535276981chr111854869620407922040864172,195,2040792,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.