Schema for xenoRefSeqAli
  Database: tetNig2    Primary Table: xenoRefSeqAli    Row Count: 256,768   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 87smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 307int(10) unsigned range Number of bases that match that aren't repeats
misMatches 143int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 217int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 143299int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_001256927varchar(255) values Query sequence name
qSize 1704int(10) unsigned range Query sequence size
qStart 833int(10) unsigned range Alignment start position in query
qEnd 1500int(10) unsigned range Alignment end position in query
tName chr3varchar(255) values Target sequence name
tSize 15489435int(10) unsigned range Target sequence size
tStart 15232603int(10) unsigned range Alignment start position in target
tEnd 15376352int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 111,240,99,longblob   Size of each block
qStarts 833,1141,1401,longblob   Start of each block in query.
tStarts 113083,256305,256733,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      tetNig2.all_mrna.qName (via xenoRefSeqAli.qName)
      tetNig2.xenoMrna.qName (via xenoRefSeqAli.qName)
      tetNig2.xenoRefGene.name (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
873071430022172143299+-NM_00125692717048331500chr31548943515232603153763523111,240,99,833,1141,1401,113083,256305,256733,
68330610200424772573+-NM_0012520281628114769chrUn_random1078085871292494912927930890,3,27,27,66,68,103,24,114,204,207,263,348,420,488,745,94880657,94880808,94881628,94882377,94882713,94883066,94883226,94883614,
58553227001981699848157+-NM_00110250646113432863chr122981688495753935963,42,149,282,168,33,24,42,18,343,475,812,994,1354,2530,2695,2779,2845,22927753,22950684,22966270,22966452,22966809,22970377,22976551,22976650,22976713,
63144013200529564787++NM_01820824754531320chr197272499606860760739667240,87,87,17,27,69,45,453,873,975,1063,1109,1206,1275,6068607,6069608,6073158,6073341,6073387,6073773,6073921,
5851478713023682341351084+-NM_00102409753901592820chr12298168849575846814146,322,151,122,3,297,225,600,66,117,72,51,72,183,159,305,642,793,915,918,1245,1500,2103,2199,2382,2454,2529,2637,22923220,22926444,22926784,22935477,22935732,22951179,22951506,22951761,22952367,22952463,22956898,22970359,22971209,22976548,
5851502688019882611154747+-NM_0010241015297782727chr12298168849576209212272,188,284,279,204,600,66,117,72,51,72,183,78,350,538,843,1173,1407,2010,2106,2289,2361,2436,2544,22919596,22926582,22941937,22942248,22942578,22951761,22952367,22952463,22956898,22970359,22971209,22976548,
5851479692023582611154741+-NM_00102409954041672834chr12298168849576210412315,142,266,387,141,600,60,117,72,51,72,183,167,512,654,956,1343,1514,2117,2213,2396,2468,2543,2651,22919584,22919929,22928099,22942254,22955842,22956013,22956619,22956715,22956898,22970359,22971209,22976548,
7952533906646666119747++NM_00108258954142461842chr12298168866663316787008781,63,79,194,398,79,36,246,414,717,796,1035,1433,1806,6666331,6722912,6738906,6761747,6782917,6783645,6786972,
797355163043130130++NM_15376625397321323chrUn_random10780858727790094277906852360,201,732,1122,27790094,27790484,
797355163043130130++NM_15376726728651456chrUn_random10780858727790094277906852360,201,865,1255,27790094,27790484,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.