Schema for xenoRefSeqAli
  Database: triMan1    Primary Table: xenoRefSeqAli    Row Count: 317,566   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1543int(10) unsigned range Number of bases that match that aren't repeats
misMatches 310int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 44int(10) unsigned range Number of bases inserted in query
tNumInsert 12int(10) unsigned range Number of inserts in target
tBaseInsert 18828int(10) unsigned range Number of bases inserted in target
strand ++char(2) values + or - for strand. First character query, second target (optional)
qName NM_001206859varchar(255) values Query sequence name
qSize 11980int(10) unsigned range Query sequence size
qStart 2528int(10) unsigned range Alignment start position in query
qEnd 4425int(10) unsigned range Alignment end position in query
tName AHIN01157057varchar(255) values Target sequence name
tSize 22366int(10) unsigned range Target sequence size
tStart 857int(10) unsigned range Alignment start position in target
tEnd 21538int(10) unsigned range Alignment end position in target
blockCount 13int(10) unsigned range Number of blocks in alignment
blockSizes 82,64,90,108,191,178,137,16...longblob   Size of each block
qStarts 2528,2652,2716,2806,2914,31...longblob   Start of each block in query.
tStarts 857,3906,5861,10442,11520,1...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)
      triMan1.all_mrna.qName (via xenoRefSeqAli.qName)
      triMan1.xenoMrna.qName (via xenoRefSeqAli.qName)
      triMan1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      triMan1.xenoRefGene.name (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5851543310002441218828++NM_0012068591198025284425AHIN0115705722366857215381382,64,90,108,191,178,137,166,177,138,186,167,169,2528,2652,2716,2806,2914,3105,3283,3420,3588,3765,3903,4089,4256,857,3906,5861,10442,11520,12741,14276,15639,16109,16389,18058,20088,21369,
58513693170022141218998++NM_0011071491061026874587AHIN0115705722366857215411382,58,90,108,191,178,139,177,135,3,186,167,172,2687,2817,2875,2965,3073,3264,3442,3747,3924,4059,4062,4248,4415,857,3912,5861,10442,11520,12741,14276,16109,16389,16566,18058,20088,21369,
58513713150022141218998++NM_0293371079828044704AHIN0115705722366857215411382,58,90,108,191,178,139,177,135,3,186,167,172,2804,2934,2992,3082,3190,3381,3559,3864,4041,4176,4179,4365,4532,857,3912,5861,10442,11520,12741,14276,16109,16389,16566,18058,20088,21369,
58513713150022141218998++NM_1730661069026964596AHIN0115705722366857215411382,58,90,108,191,178,139,177,135,3,186,167,172,2696,2826,2884,2974,3082,3273,3451,3756,3933,4068,4071,4257,4424,857,3912,5861,10442,11520,12741,14276,16109,16389,16566,18058,20088,21369,
58572125400124124++NM_1750571049291028AHIN0115708821426683278312669,306,29,722,6832,7525,
585789201000000++NM_1755851077781068AHIN0115708821426683878281990,78,6838,
58576819500127127++NM_1755861077781068AHIN0115708821426683878282663,300,78,768,6838,7528,
58576320000127127++NM_1755901077781068AHIN0115708821426683878282663,300,78,768,6838,7528,
58574418900257257++NM_1755911077781068AHIN0115708821426683878283540,93,300,78,648,768,6838,7408,7528,
585783211000000++NM_0010099751077781072AHIN0115708821426683878321994,78,6838,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.