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Database: tupBel1 Primary Table: all_est Row Count: 16,681 Data last updated: 2012-06-11
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | info | description |
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| bin | 586 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
| matches | 157 | int(10) unsigned | range | Number of bases that match that aren't repeats |
| misMatches | 0 | int(10) unsigned | range | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
| tNumInsert | 0 | int(10) unsigned | range | Number of inserts in target |
| tBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in target |
| strand | - | char(2) | values | + or - for strand. First character query, second target (optional) |
| qName | BI975165 | varchar(255) | values | Query sequence name |
| qSize | 157 | int(10) unsigned | range | Query sequence size |
| qStart | 0 | int(10) unsigned | range | Alignment start position in query |
| qEnd | 157 | int(10) unsigned | range | Alignment end position in query |
| tName | scaffold_115401.1-243207 | varchar(255) | values | Target sequence name |
| tSize | 243207 | int(10) unsigned | range | Target sequence size |
| tStart | 133667 | int(10) unsigned | range | Alignment start position in target |
| tEnd | 133824 | int(10) unsigned | range | Alignment end position in target |
| blockCount | 1 | int(10) unsigned | range | Number of blocks in alignment |
| blockSizes | 157, | longblob | | Size of each block |
| qStarts | 0, | longblob | | Start of each block in query. |
| tStarts | 133667, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 586 | 157 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | BI975165 | 157 | 0 | 157 | scaffold_115401.1-243207 | 243207 | 133667 | 133824 | 1 | 157, | 0, | 133667, |
| 585 | 126 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | BI975165 | 157 | 31 | 157 | scaffold_123908.1-121201 | 121201 | 72122 | 72248 | 1 | 126, | 31, | 72122, |
| 585 | 128 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | - | BI975165 | 157 | 29 | 157 | scaffold_130561.1-52309 | 52309 | 48668 | 48797 | 2 | 92,36, | 0,92, | 48668,48761, |
| 587 | 128 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | + | BI975163 | 129 | 0 | 129 | scaffold_131641.1-314154 | 314154 | 278845 | 278974 | 1 | 129, | 0, | 278845, |
| 587 | 179 | 1 | 0 | 0 | 2 | 4 | 3 | 4 | + | BI975164 | 184 | 0 | 184 | scaffold_131641.1-314154 | 314154 | 279491 | 279675 | 5 | 30,18,35,62,35, | 0,30,49,84,149, | 279491,279522,279540,279576,279640, |
| 586 | 138 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | BI975166 | 138 | 0 | 138 | scaffold_137121.1-328252 | 328252 | 139170 | 139308 | 1 | 138, | 0, | 139170, |
| 585 | 126 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | BI975165 | 157 | 31 | 157 | scaffold_143206.1-65253 | 65253 | 54316 | 54442 | 1 | 126, | 31, | 54316, |
| 585 | 130 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | BI975165 | 157 | 27 | 157 | scaffold_1604.1-238595 | 238595 | 129896 | 130026 | 1 | 130, | 0, | 129896, |
| 585 | 128 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | BI975165 | 157 | 29 | 157 | scaffold_16604.1-110902 | 110902 | 0 | 128 | 1 | 128, | 29, | 0, |
| 585 | 256 | 2 | 0 | 1 | 0 | 0 | 0 | 0 | + | CF527148 | 259 | 0 | 259 | scaffold_100019.1-48780 | 48780 | 3834 | 4093 | 1 | 259, | 0, | 3834, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server