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Database: xenLae2 Primary Table: all_est Row Count: 723,751 Data last updated: 2018-10-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | description |
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| bin | 709 | smallint(5) unsigned | Indexing field to speed chromosome range queries. |
| matches | 1071 | int(10) unsigned | Number of bases that match that aren't repeats |
| misMatches | 17 | int(10) unsigned | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | Number of bases that match but are part of repeats |
| nCount | 0 | int(10) unsigned | Number of 'N' bases |
| qNumInsert | 1 | int(10) unsigned | Number of inserts in query |
| qBaseInsert | 11 | int(10) unsigned | Number of bases inserted in query |
| tNumInsert | 2 | int(10) unsigned | Number of inserts in target |
| tBaseInsert | 303 | int(10) unsigned | Number of bases inserted in target |
| strand | - | char(2) | + or - for strand. First character query, second target (optional) |
| qName | AB047065 | varchar(255) | Query sequence name |
| qSize | 1099 | int(10) unsigned | Query sequence size |
| qStart | 0 | int(10) unsigned | Alignment start position in query |
| qEnd | 1099 | int(10) unsigned | Alignment end position in query |
| tName | chr1L | varchar(255) | Target sequence name |
| tSize | 219802468 | int(10) unsigned | Target sequence size |
| tStart | 16311076 | int(10) unsigned | Alignment start position in target |
| tEnd | 16312467 | int(10) unsigned | Alignment end position in target |
| blockCount | 4 | int(10) unsigned | Number of blocks in alignment |
| blockSizes | 127,96,473,392, | longblob | Size of each block |
| qStarts | 0,138,234,707, | longblob | Start of each block in query. |
| tStarts | 16311076,16311203,16311300,... | longblob | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 709 | 1071 | 17 | 0 | 0 | 1 | 11 | 2 | 303 | - | AB047065 | 1099 | 0 | 1099 | chr1L | 219802468 | 16311076 | 16312467 | 4 | 127,96,473,392, | 0,138,234,707, | 16311076,16311203,16311300,16312075, |
| 1194 | 121 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AB092384 | 121 | 0 | 121 | chr1L | 219802468 | 79881359 | 79881480 | 1 | 121, | 0, | 79881359, |
| 1376 | 145 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AB092355 | 165 | 0 | 145 | chr1L | 219802468 | 103807794 | 103807939 | 1 | 145, | 20, | 103807794, |
| 1568 | 119 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AB092383 | 130 | 0 | 119 | chr1L | 219802468 | 128846607 | 128846726 | 1 | 119, | 0, | 128846607, |
| 1569 | 100 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AB092360 | 100 | 0 | 100 | chr1L | 219802468 | 129000461 | 129000561 | 1 | 100, | 0, | 129000461, |
| 1738 | 88 | 0 | 0 | 0 | 0 | 0 | 1 | 94 | - | AB092382 | 88 | 0 | 88 | chr1L | 219802468 | 151165570 | 151165752 | 2 | 8,80, | 0,8, | 151165570,151165672, |
| 1751 | 115 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AB092387 | 131 | 0 | 115 | chr1L | 219802468 | 152847253 | 152847368 | 1 | 115, | 16, | 152847253, |
| 1821 | 295 | 1 | 0 | 0 | 0 | 0 | 1 | 136 | - | AB092356 | 296 | 0 | 296 | chr1L | 219802468 | 162052819 | 162053251 | 2 | 172,124, | 0,172, | 162052819,162053127, |
| 1005 | 150 | 0 | 0 | 0 | 0 | 0 | 1 | 1934 | + | AB092403 | 150 | 0 | 150 | chr1S | 179946965 | 55096788 | 55098872 | 2 | 22,128, | 0,22, | 55096788,55098744, |
| 1282 | 152 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AB092385 | 168 | 0 | 152 | chr1S | 179946965 | 91446671 | 91446823 | 1 | 152, | 16, | 91446671, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server