Schema for estOrientInfo
  Database: xenTro1    Primary Table: estOrientInfo    Row Count: 1,468,754   Data last updated: 2016-04-24
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom scaffold_1varchar(255) Reference sequence chromosome or scaffold
chromStart 3610int(10) unsigned Start position in chromosome
chromEnd 3914int(10) unsigned End position in chromosome
name AL797299varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      xenTro1.all_est.qName (via estOrientInfo.name)
      xenTro1.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_136103914AL79729900000
585scaffold_136104258AL85445400000
585scaffold_136234174AL792208000120
585scaffold_136254205AL883599000130
585scaffold_136484267AL67928200000
585scaffold_136624317AL64258900000
585scaffold_137004267AL67910400000
585scaffold_137494359AL89288500000
585scaffold_137824375AL87305200000
585scaffold_139744589AL86611600000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.