| Common | Common methbase tracks for the hg38 assembly |
| DRP001914 | Omics catalogue of lung adenocarcinoma cell lines [cell line] |
| DRP003407 | Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing [DRS039492, EpiLC, spermatogonia] |
| DRP004736 | Generation of human oogonia from induced pluripotent stem cells in vitro [PGCLC, aggregate cultured PGCLC, iMeLC, iPSC] |
| DRP006124 | DNA methylome analyses and expression analysis for malignant glioma harbouring H3F3A gene mutation [glioma] |
| DRP007001 | Development of long-read whole genome methylation sequencing method using the enzymatic base conversion and the nanopore sequencing [DRS173523, DRS173524] |
| DRP007963 | Whole genome bisulfite sequencing of colorectal cancer [metastatic cancerous tissue obtained from distant lymph node metastasis, metastatic cancerous tissue obtained from hepatic metastasis, metastatic cancerous tissue obtained from lung metastasis, primary cancerous tissue] |
| DRP008243 | Transcriptome and methylome analyses of trophoblast stem-like cells derived from primed human embryonic stem cells [TSLprimed] |
| DRP012061 | Epigenetic regulation by nitrosative stress as a potential mechanism of long COVID [Small airway epithelial cell] |
| ERP004221 | Genome-wide methylome profiling of normal breast and breast tumors [Breast, human breast cancer] |
| ERP005229 | Whole-genome Bisulfite Sequencing for Methylation Analysis of human monocytes [ERS420117] |
| ERP008742 | Germ_cell_methylation_dynamics [308-D5_TE_Embryo_1, 308-D5_TE_Embryo_2, 693-D6_TE_Embryo_2, A3_mPGCLC1, BS treated DNA; PBAT library, C3_mPGCLC2, D2_mPGCLC1, D3_mPGCLC2, E3_mPGCLC2, F1_hPGCLC1, F2_mPGCLC1, F3_mPGCLC2, G2_mPGCLC1, G3_mPGCLC2, H3_mPGCLC2, P11(4), P14(2), P8(3), PBAT libraries of human ESCs H9, PBAT libraries of mouse ESCs E14 G7, PRGp8_4, Passage_10_Sort_2, Passage_10_Sort_3, Passage_10_Sort_4, S6EOSKSR_1, S6EOSKSR_3, S6EOSp15_1, S6EOSp15_2, S6EOSp5_3, S6EOSp9_1, S6EOSp9_2, S6EOSp9_3, hES1, hES2, hES3, hEpiLC_2016214_2, hEpiLC_201635, hKSR2, hKSR3, mEpiLC_E14_d1_1, mEpiLC_E14_d2_2] |
| ERP009555 | Effects of HIST1H2ac knockdown on the DNA methylation landscape of breast cancer cell line MCF-7 [ERS661357] |
| ERP010942 | We present the first genome-scale analysis of the effect of CpG methylation on DNA-binding of TFs. [ERS1642969, ERS1642970, ERS1642971, ERS1642972, ERS1642973, ERS1642976, embryo] |
| ERP011276 | 5Aza and TSA treatment of MCF7 cells (BS-seq) [Breast] |
| ERP014223 | DNA methylation profiling of human naive embryonic stem cells [embryo] |
| ERP018009 | Base resolution maps of mutations, 5-methylcytosine and 5-hydroxymethylcytosine, and transcriptome of blood, tumour and margin samples from a glioblastoma multiforme patient [brain] |
| ERP106410 | An integrated genomic analysis of L1 retrotransposon mosaicism in the brain [hippocampus] |
| ERP107813 | Bisulfite-seq of synovial biopsies from rheumatoid arthritis patients [synovial membrane] |
| ERP109610 | Bisulphite-seq to investigate the proto CpG island methylator phenotype of sessile serrated adenoma/polyps [colon] |
| ERP109664 | Bisulphite-seq to investigate the proto CpG island methylator phenotype of sessile serrated adenoma/polyps, dataset 2 [colon] |
| ERP109780 | Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the AML cell line HL-60/S4 [ERS6262761, ERS6262762, ERS6262763] |
| ERP110208 | Whole genome methylation analysis of sperm and blood from young and old men. [blood, sperm] |
| ERP110315 | Single molecule sequencing and assembly of flow sorted Y chromosome from HG02982 [lymphoblastoid cell line] |
| ERP114912 | Genome-wide Analysis of the Nucleosome Landscape in Individuals with Coffin-Siris Syndrome [ERS3374392, ERS3374393, ERS3374394, ERS3374395, ERS3374396, ERS3374397, ERS3374398, ERS3374399] |
| ERP117337 | Whole genome DNA methylation analysis of sperm DNA from normozoospermic and oligoasthenoteratozoospermic men [sperm] |
| ERP122363 | No evidence for intervention-associated DNA methylation changes in monocytes of patients with posttraumatic stress disorder or anorexia nervosa [ERS4676997, ERS4676998, ERS4676999, ERS4677000, ERS4677001, ERS4677002, ERS4677003, ERS4677004, ERS4677005, ERS4677006] |
| ERP122802 | Whole genome DNA methylation analysis of human testicular germ cells [sperm] |
| ERP123063 | Whole genome DNA methylation analysis of human embryonic stem cells [embryonic stem cell] |
| ERP127251 | Single Cell Multi-Omics of Human Preimplantation Embryos Demonstrates Susceptibility to Excess Glucocorticoid Exposure(BSseq part) [whole organism] |
| ERP129475 | DNA Methylation signature in mononuclear cells and proinflammatory cytokines in Meniere Disease [Blood] |
| ERP130693 | Performance comparison and in-silico harmonisation of commercial platforms for DNA methylome analysis by targeted bisulfite sequencing [ERS7285688, ERS7285691, ERS7285700] |
| ERP135121 | Whole Genome Bisulfite Sequencing (WGBS) of the SH-SY5Y human neuroblastoma cell line [bone marrow] |
| ERP139499 | Whole genome bisulfite sequencing of liver samples of five mammals (human, rhesus macaque, mouse, rat and dog) [liver] |
| ERP144942 | Validation of differentially methylated DNA regions in colorectal precancerous lesions. [colon] |
| SRP000941 | UCSD Human Reference Epigenome Mapping Project [Adipose, Adipose Tissue, Adrenal Gland, Aorta, Bladder, Esophagus, Gastric, IMR90 cells, Left Ventricle, Liver, Lung, Ovary, Pancreas, Psoas Muscle, Right Atrium, Right Ventricle, SRS004212, SRS004213, SRS116479, SRS116480, SRS172880, SRS172881, SRS184456, SRS184459, SRS184460, SRS184461, SRS267132, SRS267133, SRS287638, SRS287639, Sigmoid Colon, Small Intestine, Spleen, Thymus] |
| SRP000996 | BI Human Reference Epigenome Mapping Project [CD184+ endoderm cultured cells, CD19, CD34 Primary Cells, Fetal Adrenal, Fetal Heart, Fetal Muscle, Leg, Fetal Muscle, Trunk, Fetal Placenta, Fetal Spinal Cord, Fetal Stomach, Fetal Thymus, IMR90 cells, SRS309498, SRS309499, SRS360524, SRS360531, SRS406770, SRS406771, adult CD14, adult CD3, adult CD56] |
| SRP001371 | University of Washington Human Reference Epigenome Mapping Project [Fetal Intestine, Large, Fetal Intestine, Small] |
| SRP001720 | Dynamic Changes in the Human Methylome During Differentiation [Embryonic stem cells, Fibroblasts derived from human embryonic stem cells, Newborn Human Foreskin Fibroblasts] |
| SRP003529 | Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells [SRS114877, SRS114889, SRS114890, SRS114891, SRS114892, SRS114893, SRS114894, SRS114895, SRS152868, SRS153033] |
| SRP006728 | Genome-wide DNA methylation mapping in breast cancer cells (HCC1954) and normal breast cells (HMEC) [breast cancer cells] |
| SRP006774 | Increased methylation variation in epigenetic domains across cancer types [SRS193045, SRS193046, SRS193047, SRS193048, SRS193049, SRS193050, SRS193051, SRS193052] |
| SRP007400 | Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates [Sperm] |
| SRP007820 | The DNA methylomes of a newborn and a centenarian [Peripheral blood, Umbilical cord blood, peripheral blood] |
| SRP008144 | Directional DNA methylation changes and complex intermediate states accompany lineage specificity in the adult hematopoietic compartment [B cell, HSPC, Neutrohphil, umbilical cord blood] |
| SRP008337 | Role of DNMT3B in the regulation of early neural and neural crest specifiers [H9 cells, hESC] |
| SRP011746 | Ultra-low-input, tagmentation-based whole genome bisulfite sequencing [SRS302004] |
| SRP011945 | Base Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome [ES cells, mouse embryonic stem cells] |
| SRP012161 | Evolutionary Significance of DNA Methylation in Human and Chimpanzee Brains [prefrontal cortex] |
| SRP012412 | GSE59395: Genome-wide map of regulatory interactions in the human genome [adrenal gland, body of pancreas, bone marrow, cell line, esophagus muscularis mucosa, esophagus squamous epithelium, fibroblast of arm, gastroesophageal sphincter, heart left ventricle, hepatocyte, lower leg skin, mammary epithelial cell, motor neuron, ovary, prostate gland, right lobe of liver, smooth muscle cell, spleen, stomach, suprapubic skin, testis, thyroid gland, tibial nerve, transverse colon, upper lobe of left lung] |
| SRP012499 | Epigenetic alterations of a DNMT3B-mutant ICF patient at base-pair resolution [blood] |
| SRP012560 | GSE34399: Replication Timing by Repli-seq from ENCODE/University of Washington [H1-hESC, skeletal muscle myoblast] |
| SRP013816 | SINE transcription by RNA polymerase III is suppressed by histone methylation but not DNA methylation [HeLa-S3] |
| SRP014634 | Examination of four human tissue samples by MethylC-seq [placenta from full-term pregnancy] |
| SRP014898 | Human Sperm Epigenomes and Transcriptomes Reveal Novel Features of Enhancers, Sex Chromosomes, piRNAs, Gametogenesis, and Inherited Small RNAs (Bisulfite-Seq) [sperm] |
| SRP015704 | Genome-wide mapping of nucleosome positioning and DNA methylation within Individual DNA molecules [glioblastoma, lung fiboblast cells] |
| SRP015742 | GSE40832: Whole Genome Bisulfite Sequencing by ENCODE/HAIB [GM12878, inner cell mass] |
| SRP019232 | Whole genome bisulfite-seq of two healthy males. [Hair follicle, Peripheral blood lymphocyte] |
| SRP021039 | Selective demethylation and altered gene expression are associated with ICF Syndrome in human induced pluripotent stem cells and mesenchymal stem cells [induced pluripotent stem cell] |
| SRP021479 | Genome-wide DNA methylation aberrations in human atherosclerosis (sequencing) [carotid tissue] |
| SRP021846 | Age-related methylation changes are associated with altered transcriptional circuitry [Methyl-seq] [skin (epidermal suction blister samples)] |
| SRP022041 | Buccals are likely to be a more informative surrogate tissue than blood for epigenome-wide association studies [Bisulfite-Seq] [Normal Buccal Cells] |
| SRP022149 | Genome-wide parent-of-origin DNA methylation analysis [Methyl-seq] [normal brain tissue, normal liver tissue, normal placenta tissue] |
| SRP022160 | Whole-genome analysis of 5-hydroxymethylcytosines and 5-methylcytosines at base resolution in human brain [Brain prefrontal cortex] |
| SRP022182 | Homo sapiens Epigenomics [SRS419301, SRS419383] |
| SRP026048 | Global epigenomic reconfiguration during mammalian brain development [brain (cerebral cortex), brain (dorsal prefrontal cortex), brain (frontal cortex), brain (middle frontal gyrus), embryonic stem cells] |
| SRP026604 | Genome-wide methylation maps for Proliferating and Senescent cells [cells bypassing senescence, proliferating cells, senescent cells] |
| SRP028577 | Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization [Bisulfite-seq] [Activated B-cells, Activated B-cells_day 16, Activated B-cells_week 3, EBV transformed B-cells, EBV transformed B-cells_16 days post infection, EBV transformed B-cells_3 weeks post infection, Resting B-cells] |
| SRP028600 | Charting a dynamic DNA methylation landscape of the human genome [cell line, cortex, primary, primary tumor] |
| SRP028804 | The DNA methylation landscape of human early embryos [embryo] |
| SRP029519 | Induction of sarcomas by mutant IDH2 [10T isogenic cell line with IDH2 mutation] |
| SRP032354 | whole-genome bisulfite sequencing (BS-seq) of HEK293 cells (HEK293-CT) and HEK293 cells stably over-expressing the BAHD1 gene (HEK-BAHD1) [embryonic semi-differentiated kidley cells, modified HEK293 cell overexpressing BAHD1] |
| SRP033201 | Homo sapiens Genome sequencing [SRS504842] |
| SRP033252 | Genome-wide profiling of the functional DNA methylation landscape at base-pair resolution in human cancer types [BS-seq] [Blood (B-cells), Brain, Brain (grey matter), Brain (white matter), Breast, Colon, Liver, Lung, Placenta, Prostate] |
| SRP033283 | The RON receptor tyrosine kinase promotes metastasis by triggering epigenetic reprogramming through the thymine glycosylase MBD4 (Bisulfite-Seq) [breast cancer cell line] |
| SRP033491 | China_type_2_diebetes_family [SRS510685, SRS510686, SRS510687] |
| SRP033504 | Epigenome analysis of human epidermal samples with aging and sun exposure [dermis] |
| SRP035642 | The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts [Whole genome bisulfite sequencing] [skin] |
| SRP037971 | Genome wide profiling of MBD2 binding [MCF-7 WT] |
| SRP038103 | Genome-wide methylation maps for untreated and Aza treated AML3 cells [AML3] |
| SRP041025 | WGBS data of pediatric B-cell acute leukemias [bone marrow / peripheral blood] |
| SRP041718 | Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome [primary] |
| SRP041720 | Genome-wide profiling of the DNA methylation landscape at base-pair resolution in human neurological disorders (Bisulfite-Seq) [brain Grey matter] |
| SRP041822 | Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels [Bisulfite-Seq] [Lymphoblastoid Cell Line] |
| SRP041828 | Comparison of nucleosome occupancy and chromatin states between normal and cancer cell lines [HMEC, MCF7, PC3, PrEC] |
| SRP041984 | Epigenetic and transcriptional aberrations in human pluripotent stem cells reflect differences in reprogramming mechanisms [fibroblast, pluripotent] |
| SRP043461 | The effects of the global loss of DNA methylation on the functional cancer epigenome (Bisulfite-seq) [DKO1 cells, HCT116 cells] |
| SRP045269 | Global loss of DNA methylation uncovers intronic enhancers in genes [human colorectal cancer cell line] |
| SRP045902 | Resetting Transcription Factor Control Circuitry Towards Ground State Pluripotency In Human [embryonic stem cells] |
| SRP047086 | A public-private-academic consortium, Genome-in-a-Bottle (GIAB), hosted by NIST to develop reference materials and standards for clinical sequencing [B-Lymphocyte] |
| SRP048761 | Dissecting neural differentiation regulatory networks through epigenetic footprinting [ES-derived neural progenitor cells] |
| SRP048844 | Genome-wide profiling of DNA methylation at single-base resolution based on MeDIP-bisulfite high-throughput sequencing and ridge regression (MethyC + MeDIP) [ovarian epithelial] |
| SRP048896 | Genome-wide profiling of the DNA methylation landscape at base-pair resolution in human acute myeloid leukemia cell lines. [AML] |
| SRP049651 | Large-scale epigenetic reprogramming is punctuated late during the evolution of pancreatic cancer progression [BS-Seq] [Normal Pancreas, Patient A38, Primary Tumor, liver metastasis, lung metastasis, peritoneal metastasis, primary tumor] |
| SRP049710 | Loss of 5-hydroxymethylcytosine is linked to gene body hypermethylation in kidney cancer [matched normal, tumor] |
| SRP049782 | Targeted disruption of DNMT1, 3A and 3B in human embryonic stem cells [WGBS] [HUES64 DNMT3A KO, HUES64 DNMT3A/3B DKO, HUES64 DNMT3B KO] |
| SRP049936 | DNA methylation in mammalian placentas [cerebrum, cordblood, extraembryonic membrane, placenta, trophoblasts] |
| SRP049985 | Whole Genome Bisulfite Sequencing (WGBS) of cKIT+ sorted cells from 57-137 day old fetal testes and ovaries. [cKIT+ FACS sort] |
| SRP050499 | The Transcriptome and DNA Methylome Landscapes of Human Primordial Germ Cells [Primordial germ cells, embryo] |
| SRP051366 | Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (Bisulfite-Seq) [Monocyte-derived dendritic cells] |
| SRP051367 | Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (TAB-Seq) [Monocyte-derived dendritic cells] |
| SRP052842 | Pleiotropic Analysis of Lung Cancer and Blood Triglycerides [purified AT2 cells] |
| SRP055494 | BLUEPRINT methylome of the HapMap cell line GM18507 (Coriell cell line NA18507) [modified B cell (lymphoblastoid)] |
| SRP056911 | DNA methylation in the placentas of typically developing and autistic children [placenta] |
| SRP057098 | A Unique Gene Regulatory Network Resets the Human Germline Epigenome for Development [gonad] |
| SRP057450 | A novel bivalent chromatin state exists at enhancers [HCT116] |
| SRP058102 | Analysis of DNA Methylation in replication and cell cycle arrest. [Primary dermal fibroblasts] |
| SRP059289 | Conversion of Human Gastric Epithelial Cells to Multipotent Endodermal Progenitors using Defined Small Molecules [DNA methylation] [hepatoctes induced by differentiation of hiMEPs, hiMEPs derived from GECs by reprogramming, stomach] |
| SRP059313 | UPF : Methylation_primates [blood] |
| SRP059433 | Gender Differences in Global but not Targeted Demethylation in iPSC Reprogramming [BS seq AIDKO MEF1, BS seq ESC 1, BS seq ESC 2, BS seq ESC 3, BS seq MALE MEF 1, BS seq MALE MEF 2, BS seq MALE MEF 3, BS seq MEF 1, BS seq MEF 2, BS seq MEF 3, BS seq d6 SSEA1 positive 1, BS seq d6 SSEA1 positive 2, BS seq d6 SSEA1 positive 3, BS seq d6 Thy1 positive 1, BS seq d6 Thy1 positive 2, BS seq d6 Thy1 positive 3, Fibroblast, Reprogramming fibroblast, iPSC] |
| SRP059772 | Whole genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver [oxBS-Seq and BS-Seq] [liver, lung] |
| SRP065930 | HX1 [Blood] |
| SRP067779 | Novel contribution of acetylated histone variant H2A.Z in activation of neo-enhancers in prostate cancer [NOMe-seq] [LNCaP clone FGC (ATCC CRL-1740). Androgen-sensitive human prostate adenocarcinoma cells, Primary prostate epithelial cells. Cambrex Bio Science Cat. No. CC-2555] |
| SRP068579 | Reversion to naïve human pluripotency creates a new methylation landscape devoid of blastocyst or germline memory [EpiLC, hESC] |
| SRP071771 | Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tissue-of-origin mapping from plasma DNA [WGBS] [liver, skeletal muscle] |
| SRP071891 | Functional Haploid Human Oocytes Generated from Polar Body Genomes (Bisulfite-Seq) [Polar Body Nuclear Transfer, embryonic stem cell] |
| SRP072071 | study of brain methylation [brain, pre-frontal cortex] |
| SRP072075 | Epigenomic analysis of lymphocytes and fibroblasts [foreskin fibroblasts, sorted CD4+ T cells] |
| SRP072078 | epigenomic analysis of lung and liver [liver, lung] |
| SRP072141 | stem cell epigenomics [H1 stem cells] |
| SRP074177 | Nucleation of DNA Repair Factors by FOXA1 Links DNA Demethylation to Transcriptional Pioneering [MCF-7 cells (siFOXA1- transfected), MCF-7 cells (siNS- transfected)] |
| SRP074598 | Single Cell DNA Methylome Sequencing of Human Preimplantation Embryos [Heart, ICM, Sperm, TE, Villus] |
| SRP074852 | DNMT and HDAC inhibitors globally induce cryptic TSSs encoded in long terminal repeats [NCI-H1299-EGFP/NEO] |
| SRP075292 | Cumulative Impact of Polychlorinated Biphenyl and Large Chromosomal Duplications on DNA Methylation, Chromatin, and Expression of Autism Candidate Genes. [Brain, human neuroblastoma cell line, human neuroblastoma cell line with extra copy of part of maternal chr15, human neuroblastoma cell line with extra copy of part of maternal chr15 and part of chr22] |
| SRP075562 | ZBTB33 (Kaiso) Differentially Regulates Cell Cycle Through cyclin D1 and cyclin E1 in a Cell Specific Manner [BiSulfite-seq] [HeLa_S3] |
| SRP075876 | Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain [brain, human embryonic stem cell line] |
| SRP075910 | Global delay in nascent strand DNA methylation [cell line, embryonic stem cell] |
| SRP076893 | “Same Difference”: Comprehensive evaluation of four DNA methylation measurement platforms [lung fibroblast] |
| SRP080340 | Evidence That Three Classes of Methylomes Specific for Stem, Somatic and Transformed Cells Are Set by Three Independent Mechanisms (Methyl-Seq) [basophilic erythroblasts] |
| SRP080893 | Active and senescent human hematopoietic stem and progenitor cell whole genome bisulfite sequencing [DNA] |
| SRP082156 | Cancer Associated Fibroblasts are defined by a core set of epigenome changes that contribute to the tumor phenotype [WGBS] [Prostate] |
| SRP085035 | Molecular Criteria for Defining the Naive Human Pluripotent State [methylation profiling] [Naive human embryonic stem cells, Primed human embryonic stem cells] |
| SRP089722 | Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling [WGBS] [primary prostate epithelial cells (PrEC), prostate cancer cell line (LNCaP)] |
| SRP090105 | The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis [WGBS_Hs] [retina] |
| SRP092113 | Splinted Ligation Adapter Tagging, a novel library preparation for whole genome bisulphite sequencing [ALL cell line, lymphoblastoid cell line] |
| SRP092462 | HUES8 TET1/2/3 TKO hESCs [Human Embryonic Stem Cells] |
| SRP093254 | Whole Genome Bisulfite Sequencing of HUES8 WT and HUES8 TET1/2/3 TKO hESCs [human embryonic stem cells] |
| SRP093764 | Epigenetic resetting of human pluripotency [ESC] |
| SRP094554 | A Molecular signature for Delayed Graft Function [BS-Seq] [Kidney] |
| SRP094721 | Epigenomic landscapes of hESC-derived neural rosettes [neural stem cells] |
| SRP094960 | Genomic profiling of human spermatogonial stem cells [WGBS] [testis] |
| SRP095006 | Genome-wide determination of on-target and off-target characteristics for RNA-guided DNA Methylation by dCas9 methyltransferases (CRISPRme) [WGBS] [Human embryonic kidney cell line] |
| SRP096028 | Dental Pulp Stem Cells Model Early Life and Imprinted DNA Methylation Patterns. [Dental Pulp Stem Cells, LUHMES] |
| SRP097759 | S-adenosylhomocysteine hydrolase participates in DNA methylation inheritance [kidney] |
| SRP098648 | Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA [BiSulfite-seq] [Adult Brain Frontal Lobe, LNCaP clone] |
| SRP099603 | Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the methylome [Postmortem brain tissue] |
| SRP100067 | Epigenome-wide analysis of DNA methylation in lung tissue shows concordance with blood studies and identifies tobacco smoke-inducible enhancers [purified primary alveolar epithelial type 2 cells] |
| SRP101887 | Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability [Bisulfite-Seq] [anterior cingulate cortex (BA24), hippocampus (HC), nucleus accumbens (NAcc), prefrontal cortex (BA9)] |
| SRP102997 | Genome-wide nucleosome occupancy and DNA methylation profiling in endometriosis cells [hTERT immortalized endometriosis cells] |
| SRP103077 | Mapping DNA methylation and CTCF/cohesin occupancy on nascent chromatin and DNMT-targeted nascent chromatin [human embryonic stem cells, mouse embryonic stem cells] |
| SRP103794 | Methylation DNA mediated KLF4 binding activity in glioblastoma cells [Brain] |
| SRP103839 | Single-cell Multi-omics Sequencing and Analyses of Human Colorectal Cancer [CRC, HeLa contaminant] |
| SRP103943 | DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A [WGBS] [Human epithelial HEK 293T cells] |
| SRP104141 | NicE-seq: high resolution open chromatin profiling [colorectal] |
| SRP104305 | 5hmC dynamically correlated with enhancer''s activities during hES-to-Pancreatic endoderm cell differentiation (Bisulfite-Seq) [ES cells] |
| SRP104789 | Culture of Human embryonic stem cells in different media [Embryonic Stem Cells] |
| SRP106910 | Human memory CD8 T-cell effector-potential is epigenetically preserved during in vivo homeostasis [HuTCM, HuTEM, HuTN, HuTSCM, TCMD204, TEMD203, TND201, TSD202] |
| SRP107857 | TRIM28-Regulated Transposon Repression Is Required for Human Germline Competency and Not Primed or Naive Human Pluripotency [naive embryonic stem cell, primed embryonic stem cell] |
| SRP107883 | Archaic and modern bone DNA methylation maps from the Neanderthal, Denisovan, modern human and chimpanzee [Bone] |
| SRP113417 | Chromatin and Transcriptional Dynamics in Adult Germline Stem Cells and Mammalian Spermatogenesis [Spermatogonia (Thy1+), Testis, testis] |
| SRP115074 | Lack of Repressive Capacity of Human Promoter DNA Methylation identified through Genome-Wide Epigenomic Manipulation [human brest cancer cell line] |
| SRP116948 | Whole genome bisulphite sequencing using the Illumina X system [Bisulfite-Seq] [EBV-transformed lymphoblastoid cell line, Fetal lung fibroblast] |
| SRP117084 | Transcription elongation regulates genome 3D structure [monocyte derived macrophages (MDM)] |
| SRP117159 | Homo sapiens cultivar:PLC/PRF/5 Raw sequence reads [liver] |
| SRP119706 | DNA hypermethylation encroachment at CpG island borders in cancer is predisposed by H3K4 monomethylation [WGBS_Hs] [adjacent benign normal prostate, prostate tumor] |
| SRP124518 | UBE3A-mediated regulation of imprinted genes and epigenome-wide marks in human neurons [chromosome duplication model of Dup15q syndrome, neuronal cell line] |
| SRP125826 | Intervals of unmethylated DNA spatially co-segregate in cis and in trans [WGBS] [Human Erythroid Progenitor Cells] |
| SRP125973 | A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs [human cervical cancer cell line] |
| SRP125992 | Activation of neuronal genes via LINE-1 elements upon global DNA demethylation in human neural progenitors [fetal-derived neural progenitor cells (sai)] |
| SRP126139 | G-quadruplex structures moulds the DNA methylome [cell line] |
| SRP126677 | Genome-wide profiling at single-nucleotide resolution of brain cell types in schizophrenia [WGBS] [brain] |
| SRP126972 | Distinct Epigenetic Subtypes Are Linked to Disease Progression in Low-Risk MDS [Peripheral blood (PB) cells] |
| SRP127273 | Scalable and efficient single-cell DNA methylation sequencing by combinatorial indexing. [Embryonic Kidney; Blood; Skin] |
| SRP127667 | Epigenetic marks and nuclear transcriptomes of cardiac myocytes [heart, left ventricle] |
| SRP128919 | DNA methylation in hESC derived brain organoids and iPSC derived neurons, astrocytes and neural progenitors [whole organoid] |
| SRP130768 | Homo sapiens bisulfite and mRNA sequencing of blood T cells and LCM collected lung cells [Blood, Lung] |
| SRP130992 | Genome-wide Methylation in Cordblood CD4+ Cells from Newborns Exposed vs. Unexposed to Maternal Tobacco Smoke During Pregnancy [Cord blood CD4+ cells] |
| SRP131087 | An epigenomic approach to identifying differential overlapping and cis-acting lncRNAs in cisplatin-resistant cancer cells [BiSulfite-seq] [Lung, Ovarian] |
| SRP131112 | Endurance training remodels sperm-borne small RNA expression and methylation at neurological gene hotspots [RRBS] [semen] |
| SRP131790 | Whole Genome Bisulfite Sequencing of Autism and Control Human BA9 Cortex [dorsal lateral prefrontal cortex] |
| SRP131900 | Lymphocyte-specific chromatin accessibility pre-determines glucocorticoid resistance in acute lymphoblastic leukemia [WGBS] [ALL xenograft cells] |
| SRP132292 | Genetic determinants and epigenetic effects of pioneer factor binding [WGBS] [immortalized BJ foreskin fibroblast cell line] |
| SRP132785 | Active BRAF-V600E is the key player in generation of a sessile serrated polyp-specific DNA methylation profile (WGBS data set) [Blood, colon] |
| SRP133910 | Homo sapiens Raw sequence reads [Blood, peripheral blood] |
| SRP133941 | Longitudinal Personal DNA Methylome Dynamics in a Human with a Chronic Condition [Peripheral Blood Mononuclear Cells] |
| SRP133999 | Developmental origins define epigenomic differences between subcutaneous and visceral adipocytes [Bisulfite-Seq] [Blood, Subcutaneous Adipose, Visceral Adipose] |
| SRP136499 | A genomic study of the contribution of DNA methylation to regulatory evolution in primates [heart, heart (later reclassified as liver), kidney, liver, lung] |
| SRP144098 | DNMT3B maintains mCA landscape and regulates mCG status of bivalent promoters in human embryonic stem cells [human embryonic stem cell] |
| SRP144312 | Widespread transposable element-driven oncogene expression in cancers [lung cancer cell line] |
| SRP148683 | Comparison of transcriptome profiles of human embryo cultured in either closed or standard incubator [Preimplantation embryo] |
| SRP151496 | Generation of FOXO3 engineered human stem cells with enhanced efficacy and safety [Human ECs, Human MSCs, Human TransMSCs, Human VSMCs] |
| SRP155006 | Epigenomic signatures in liver and blood of Wilson disease patients include hypermethylation of liver-specific enhancers [liver, whole blood] |
| SRP156136 | MethMotif: An integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles [colon, spleen] |
| SRP158279 | Epigenetic reprogramming at estrogen-receptor binding sites alters the 3D chromatin landscape in endocrine resistant breast cancer [WGBS] [breast cancer cells] |
| SRP158409 | H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes [C3H embryo-derived mesenchymal progenitor cells, C57BL/6 x 129S4/SvJae F1 embryo-derived embryonic stem cells, Patient-derived head and neck squamous cell carcinoma cell line] |
| SRP158894 | Optimization of the input amount of library for whole-genome bisulfite sequencing on HiSeq X Ten [lung] |
| SRP158895 | Comparison of methylome data obtained with rPBAT and tPBAT. [lung] |
| SRP158940 | N6-methyladenine DNA Modification in Glioblastoma [ChIP-seq, BiSulfite-seq, DIP-seq] [Patient Derived Glioblastoma Stem Cell] |
| SRP161745 | Human retinal pigment epithelium [Cultured retinal pigment epithelum, eye tissue] |
| SRP161783 | Whole Genome Bisulfite Sequencing of Rett Syndrome and Control Human BA9 Cortex [brain] |
| SRP162996 | Very long intergenic non-coding RNA transcripts and expression profiles are associated to specific childhood acute lymphoblastic leukemia subtypes [CD10+ CD19+ Cord blood, Pre-B t(12;21) [ETV6-RUNX1] acute lymphoblastic leukemia] |
| SRP163251 | Rates of acquisition of de novo mutations in human pluripotent stem cells under different culture conditions [PSC] |
| SRP167041 | Homo sapiens Epigenomics [breast, plasma] |
| SRP168427 | Tet inactivation disrupts YY1 binding and long-range chromatin interactions to cause developmental defects in embryonic heart [embryonic heart] |
| SRP170543 | Impaired DNA methylation in oocytes with a mutation in KHDC3L causing recurrent hydatidiform mole [embryo day 6] |
| SRP174219 | Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer [Bisulfite-Seq] [Breast] |
| SRP175163 | Loss of hydroxymethylcytosine is an independent adverse prognostic factor in clear cell Renal Cell Carcinoma (ccRCC) and can be abrogated by ascorbic acid mediated TET activation [786-O] |
| SRP185639 | DNMT3B has oncogenic activity but evidence suggests that it does not promote CIMP nor cooperate with activated BRAFV600E in human intestinal cancer. (WGBS) [Human Fetal Lung Fibroblasts] |
| SRP186015 | Study of DNA methylation pattern in single basepair resolution in the human dopaminergic neurons [LUHMES-derived neurons] |
| SRP186275 | Bisulfite-seq profiling of the human neutrophil genome during PMA- and E. coli encounter-induced activation [peripheral blood] |
| SRP186642 | Genome-wide methyl-cytosine competition by DNMT and TET [ESCs, EpiSCs, In vitro derived motor neurons, embryonic stem cell, embryonic stem cells] |
| SRP187153 | Comparison of methylome data generated with HiSeq X Ten and NovaSeq [IMR-90 cell] |
| SRP192966 | Gene expression, methylome and splicing of THP-1 monocytic cells and THP-1-derived macrophage [Monocytic cell line] |
| SRP193115 | ATAC-Me captures spatiotemporal dynamics of DNA methylation across the chromatin accessible genome [THP-1 Monocyte] |
| SRP193431 | Early detection of lung cancer by deep methylation sequencing of circulating tumor DNA [Plasma] |
| SRP193843 | DNMT1 drives 4D genome rewiring during oncogene induced senescence [WI-38hTERT/GFP-RAF1-ER] |
| SRP194341 | Whole-exome, transcriptome and epigenome data for homo sapiens from normal to dysplasia to colorectal cancer [Colon] |
| SRP198282 | Hammer-seq to measure kinetics of DNA methylation maintenance in HeLa cells [cervix, inner cell mass] |
| SRP198624 | Whole genome bisulfite sequencing of esophagus squamous cell carcinoma [Esophagus] |
| SRP199025 | Molecular mechanism of KCNJ5 gene hotspot mutation in adrenal aldosteronoma [adrenal gland] |
| SRP199200 | CATACOMB: an endogenous inducible gene that antagonizes H3K27 methylation activity of Polycomb Repressive complex 2 via a H3K27M-like mechanism [HEK-293T] |
| SRP213117 | Single-cell transcriptome analysis of uniparental embryos reveals parent-of-origin effects on human preimplantation development [methylation] [embryo] |
| SRP213665 | The strand-biased mitochondrial DNA methylome and its regulation by DNMT3A [HEK293T_WGBS] [HEK293T] |
| SRP215940 | The DNA methylomes of hyper-IgM syndrome type 2 B cells provide insights into the roles of activation-induced deaminase prior to the germinal center reaction [naive b cell, non-class-switched memory b cells] |
| SRP217135 | Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing [WGBS] [white blood cells, whole blood] |
| SRP217139 | Lactate mediated epigenetic reprogramming during cancer associated fibroblast formation [CAF, MSC] |
| SRP219798 | Regulation of DNA Methylation at Enhancers by TET2 Finetunes Gene Transcription in ERa-Positive Breast Cancer Cells [MCF7 cells] |
| SRP220230 | Human, Chimpanzee, Gorilla, Orangutan, Macaque Epigenomics [LCL] |
| SRP220467 | Human embryonic stem cell-derived organoidal retinoblastoma reveals cancerous origin and therapeutic target [human Rb organoids, retina] |
| SRP221227 | Persistent epigenetic memory impedes rescue of the telomeric phenotype in human ICF iPSCs following DNMT3B correction [iPSCs] |
| SRP223055 | Tibetan humans Raw sequence reads [blood] |
| SRP223612 | Whole Genome Bisulfite sequencing: Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs [bladder cell line, blood, bone marrow, brain, breast (primary tissue), breast cell line, cell line, liver, lymph node, placenta, placenta, maternal] |
| SRP224808 | Whole genome bisulfite sequencing of human spermatozoa reveals differentially methylated patterns from type 2 diabetic patients [semen] |
| SRP226234 | An ExtendedCulture System that Supports Human Primordial Germ Cell-Like Cells Survival and Initiation of DNA Methylation Erasure [hESCs] |
| SRP229996 | Stem and effector CD8 T-cells from human cancers [Blood, Kidney tumor] |
| SRP230221 | Chromatin dynamics reveal circadian control of human in vitro islet maturation [WGBS] [Primary adult alpha cell, Primary adult beta cell, hPSC-derived beta cell, hPSC-derived definitive endoderm, hPSC-derived endocrine progenitor, hPSC-derived pancreatic progenitor 1, hPSC-derived pancreatic progenitor 2, hPSC-derived poly-hormonal cell] |
| SRP230618 | Differential DNA methylation profiles of HS ILAE type 1 in human temporal lobe epilepsy [Brain; Hippocampus] |
| SRP230793 | Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes [umbilical cord blood] |
| SRP233253 | Comparison of EM-seq and WGBS results [B-Lymphocyte, lung, plasma] |
| SRP237955 | Molecular atlas of fetal and adult human liver sinusoidal endothelial cells: a F8 secreting cell [methylation III] [Human hepatic sinusoidal endothelial cells] |
| SRP238023 | Reliable tumor detection using cerebrospinal fluid cell-free DNA methylomes in pediatric medulloblastoma [cerebellum, cerebrospnial fluid from Hydrocephalus patient, cerebrospnial fluid from pediatric medullablastoma patient, pediatric medulloblastoma tumr tissue] |
| SRP239226 | Principles of Signalling Pathway Modulation for Enhancing Human Naïve Pluripotency Induction [WGBS] [human embryonic stem cells] |
| SRP241842 | REH MultiOmics [B cell precursor leukemia] |
| SRP246939 | Beta cell-specific CD8+ T cells maintain stem-cell memory-associated epigenetic programs during type 1 diabetes (WGBS) [HAART HIV TN CD8 T cells, Polyclonal Naive CD8 T cell HD, Polyclonal T1D Naive CD8 T cells, Polyclonal TCM CD8 T cells, Polyclonal TEM CD8 T cells, Polyclonal TSCM CD8 T cells, Tetramer+ CD8 T cells, Tetramer+ HAART CD8 T cells, Tetramer+ T1D CD8 T cells] |
| SRP250803 | Genome-wide R-loop landscapes during epigenetic programming and reprogramming [Embryonic stem cells, Induced pluripotent stem cells, Mesenchymal stem cell, Neural stem cells, Vascular endothelial cells, Vascular smooth muscle cells] |
| SRP251688 | Signalling networks constructed by integrative analysis of multi-omics in peripheral blood mononuclear cells in systemic lupus erythematous patients [PBMCs] |
| SRP253848 | LiBis: An ultrasensitive alignment method for low-input bisulfite sequencing [Blood, Tumor] |
| SRP253922 | Long-term expansion with germline potential of human primordial germ cell-like cells in vitro [Bisulfite-seq] [iPSC, ovary] |
| SRP254660 | H3K27M in Gliomas Causes a One-step Decrease in H3K27 Methylation and Reduced Spreading Within the Constraints of H3K36 Methylation [WGBS] [cell line] |
| SRP259185 | Multi-omics analysis reveals divergent epigenetic regulation of gene expression and drivers of esophageal squamous cell carcinoma (WGBS) [adjacent normal esophageal tissue, esophageal squamouse carcinoma] |
| SRP259369 | Epigenome Dysregulation Resulting from NSD1 mutation in Head and Neck Squamous Cell Carcinoma [Patient-derived head and neck squamous cell carcinoma cell line] |
| SRP260840 | Naïve human embryonic stem cells can give rise to cells with trophoblast-like transcriptome and methylome [Bisulfite-Seq] [Transdifferentiated human trophoblast stem cells, embryonic stem cells, trophoblast stem cells] |
| SRP261501 | Tissue-Biased Expansion of DNMT3A-Mutant Clones Associated with Conserved Epigenetic Alterations [umbilical cord] |
| SRP261643 | Comprehensive epigenomic profiling of human alveolar epithelial differentiation identifies key epigenetic states and transcription factor co-regulatory networks for maintenance of distal lung identity [In vitro differentiated AT1-like cells, purified primary AT2 cells] |
| SRP265926 | 2-hydroxyglutarate drives whole-genome hypermethylation in kidney cancer cells with inactivated VHL [VHL inactivated, clone12, VHL inactivated, clone30, VHL inactivated, clone44, cell line, clone12, exogenous wildtype VHL reintroduced, clone30, exogenous wildtype VHL reintroduced, clone44, exogenous wildtype VHL reintroduced] |
| SRP266187 | Non-CG methylation and multiple epigenetic layers associate child abuse with immune and small GTPase dysregulation [Lateral Amygdala (human brain tissue)] |
| SRP266653 | TNF induced inflammatory transcription dynamics and epigenetic changes [12d-TNFa treated HEK 293 cells, 12d-TNFa treated HEK 293 cells with RELA KO, 12d-TNFa treated HEK 293 cells with TET2 KO, non-treated HEK 293, non-treated HEK 293 with RELA KO, non-treated HEK 293 with TET2 KO] |
| SRP266759 | DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumour immunotolerance [BS] [MCF7, SK-MEL-28] |
| SRP267867 | Human ribosomal DNA (rDNA) epigenetic clock [whole blood] |
| SRP267967 | Characterization of universal features of partially methylated domains across tissues and species [Breast tumor, Lung] |
| SRP268755 | Probing the signaling requirements for naïve human pluripotency by high-throughput chemical screening [WGBS] [Naive hESC, Primed hESC, hESC] |
| SRP268783 | Acute depletion of CTCF rewires genome-wide chromatin accessibility [Human B Lineage Acute Lymphoblastic Leukemia SEM cell carrying bi-allelic miniAID-mClover3 knockin tags] |
| SRP268979 | Loss of epigenetic suppression of retrotransposons with oncogenic potential in aging mammary luminal epithelial cells [Mammary luminal epithelial cells] |
| SRP269389 | Targeted intragenic demethylation initiates chromatin rewiring for gene activation [HCC cell line] |
| SRP271639 | Cell-free DNA Methylation and Transcriptomic Signature Prediction of Pregnancies with Adverse Outcomes [WGBS] [plasma] |
| SRP272481 | GATA transcription factors, SOX17 and TFAP2C, drive the human germ-cell specification program [Bisulfite-Seq] [iPSC] |
| SRP272595 | WGBS analysis of various colon cancer cell lines [Colorectal Adenocarcinoma] |
| SRP273813 | Whole genome methylation sequencing of circulating tumor cells (CTCs) in Lung cancer. [Adjacent normal tissue, Lung, blood] |
| SRP278376 | Epigenetic Landscape of Pediatric Ependymoma Recurrence [brain] |
| SRP278588 | DNA methyation of intragenic CpG islands are required for differentiation from iPSC to NPC [Human induced pluripotent stem cell, Human induced pluripotent stem cell derived] |
| SRP282493 | DNA methylation maintains integrity of higher order genome architecture (WGBS) [colorectal cancer cell line] |
| SRP286180 | Comprehensive methylome sequencing reveals prognostic epigenetic biomarkers for prostate cancer mortality [Adjacent normal, Tumour] |
| SRP286271 | Homo sapiens Raw sequence reads [Cervical cancer adjacent tissue, Cervical cancer tissue, Cervical cells] |
| SRP286409 | H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination [Bisulfite-seq] [E14, Hela] |
| SRP286872 | Transient naive reprogramming corrects hiPS cells functionally and epigenetically [WGBS] [Human secondary fibroblasts, Keratinocytes, Mesenchymal stem cells, human embryonic stem cells, iPSC] |
| SRP291325 | Transient naive reprogramming corrects hiPS cells functionally and epigenetically [WGBS 2] [Cultured human fibroblasts, Human pluripotent stem cells, Human reprogramming intermediate cells, human embryonic stem cells, iPSC] |
| SRP293255 | DNA Methylation Potential Energy Landscape Analysis of Pediatric Pre-B cell Acute Lymphoblastic Leukemia (ALL) and Normal B cells and precursors [cell line, primary] |
| SRP298020 | DNA methylation analysis for target regions in human smooth muscle cells. [Cultured smooth muscle cells] |
| SRP298022 | DNA hydroxymethylation analysis for target regions in human smooth muscle cells. [Cultured smooth muscle cells] |
| SRP298508 | Alternative splicing and the epigenome in CML remission [WGBS] [PBMCs] |
| SRP299418 | cell-free DNA sequencing of plasma [plasma] |
| SRP299802 | Acute lymphoblastic leukemia displays a distinct highly methylated genome [cell line] |
| SRP302514 | Integrative multiplatform molecular profiling of human colorectal cancer reveals proteogenomic alterations underlying mitochondrial inactivation [The normal adjacent colorectal mucosa was obtained at a distance of 5 cm from the tumor., The normal adjacent colorectal mucosa was obtained at a distance of 6 cm from the tumor., The normal adjacent colorectal mucosa was obtained at a distance of 7 cm from the tumor., tumor tissue] |
| SRP304105 | Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability [cell line] |
| SRP304130 | Impact of exposures to persistent endocrine disrupting compounds on the sperm methylome in regions associated with neurodevelopmental disorders [sperm] |
| SRP304684 | Inherent genomic properties underlie the epigenomic heterogeneity of human induced pluripotent stem cells [WGBS] [SRS8188292, SRS8188293, SRS8188294, SRS8188295, SRS8188296, SRS8188297] |
| SRP304712 | Epigenome profiling in gastric carcinogenesis by whole genome bisulfite sequencing [stomach] |
| SRP308490 | Pan-cancer predictions of transcription factors mediating aberrant DNA methylation [HCC1954 cells, hTERT-HME1 cells] |
| SRP308810 | Genome-wide Programmable Transcriptional Memory by CRISPR-based Epigenome Editing [HEK293T] |
| SRP308854 | Age-associated cryptic transcription in mammalian stem cells is linked to permissive chromatin at cryptic promoters [WGBS] [umbilical cord-derived mesenchymal stem cells (PCS-500-010, lot #63216949), umbilical cord-derived mesenchymal stem cells (PCS-500-010, lot #63216950)] |
| SRP309314 | Epigenomics of nasal mucosa in children with acute respiratory illness [Nasal Mucosa] |
| SRP309354 | Stable DNMT3L Overexpression in SH-SY5Y Neurons Recreates a Facet of the Genome-Wide Down Syndrome DNA Methylation Signature [SH-SY5Y] |
| SRP309472 | Epigenetic crosstalk [KYSE-30] |
| SRP310254 | DNMT3A haploinsufficiency causes dichotomous DNA methylation defects at enhancers in mature human immune cells [BiSulfite-seq] [hESC-derived macrophages] |
| SRP314963 | The proline and serine rich protein PROSER1 mediates O-GlcNAcylation of TET2 to regulate DNA demethylation on UTX-dependent enhancers and CpG islands [WGBS] [human embryonic kidney cells] |
| SRP315039 | DNA methylome and genome sequencing of human ovarian epithelial cell line [ovarian epithelium] |
| SRP315878 | Homo sapiens Epigenomics [Bone marrow, Peripheral blood] |
| SRP316059 | NSCLP-Twins [Saliva DNA] |
| SRP316873 | Whole-Genome Bisulfite Sequencing of Nasopharyngeal Carcinoma and Nasopharyngeal Epithelial Tissues [SeqCapEpi] [Methylation Control, cell line] |
| SRP318399 |
DNA methylation profiles of four immune cell types from MS patients and healthy controls [peripheral blood] |
| SRP319892 | Expanding highly homogenous population of human primordial germ cell like cells in long-term and feeder-free culture condition [WGBS] [freshly isolated human PGCLC, human EGC, human iPSC, long-term culture human PGCLC c56, long-term culture human PGCLC c63, long-term culture human PGCLC c71, long-term culture human PGCLC c84] |
| SRP320538 | Dynamic patterns of DNA methylation in the normal prostate epithelial differentiation program are targets of aberrant methylation in prostate cancer [BiSulfite-seq] [cell line] |
| SRP321573 | Conservation and divergence of DNA methylation patterns and functions in vertebrates [Primary dermal fibroblasts, Psoas muscle] |
| SRP321876 | Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states [blood, kidney] |
| SRP323032 | Mapping the glucocorticoid gene regulatory network and alterations that contribute to steroid resistance in childhood acute lymphoblastic leukemia [WGBS] [ALL] |
| SRP323101 | RRBS-based quantitative methylation analysis define 100% methylation fidelity CpG sites [peripheral blood, retina] |
| SRP323990 | Identification of DNA Methylation Predicts Onset of PTSD and Depression Following Trauma [Peripheral blood mononuclear cells] |
| SRP324016 | Cerebrospinal fluid cell-free DNA methylomes subtyping pediatric medulloblastoma [cerebrospnial fluid from pediatric medullablastoma patient] |
| SRP324100 | Placental methylome reveals a 22q13.33 brain regulatory gene locus associated with autism [WGBS] [Placenta] |
| SRP325062 | Cerebrospinal fluid cell-free DNA methylomes recapture pediatric medulloblastoma tissue's tumor feature [CSF, Tumor_tissue] |
| SRP325428 | Systematic profiling of DNMT3A variants reveals protein instability mediated by the DCAF8 E3 ubiquitin ligase adaptor [cell line, mouse embryonic stem cells] |
| SRP325722 | Chemical-based external stimulation reprograms human somatic cells into pluripotency (WGBS) [adult human adipose derived mesenchymal stromal cells, hES cells H1, hES cells H9, human chemically induced pluripotent stem cells, human embryonic fibroblasts, human somatic cells during chemical reprogramming stage I, human somatic cells during chemical reprogramming stage II, human somatic cells during chemical reprogramming stage II without 5azac, human somatic cells during chemical reprogramming stage II without JNKIN8] |
| SRP325924 | Distinct DNA methylation landscape between pediatric brain and adult brain [cerebellum, cerebrum] |
| SRP328700 | Whole genome methylation profiliing between the IMU and KRT subtypes of HPV-associated head and neck cell carcinoma (HNSCC) [head and neck cell carcinoma] |
| SRP329794 | Anchor-Based Bisulfite Sequencing determines genome-wide DNA methylation [cell line] |
| SRP330251 | Vitamin B12 regulates the transcriptomes of human ileal epithelial cells (iECs) [Ileum] |
| SRP332046 | The WGBS and ATAC-seq from human serum and amniotic cell [blood] |
| SRP332277 | Methyl-seq Human [sperm] |
| SRP332448 | H3K9 dimethylation safeguards cancer cells against activation of the Interferon pathway [WGBS] [U937 cells] |
| SRP334550 | Proinflammatory cytokines promote TET2-mediated DNA demethylation during CD8 T cell effector differentiation [CD8+ T Cells] |
| SRP336573 | Perturbation of TET2 condensation induces genome-wide promiscuous DNA hypomethylation and curtails leukemia cell growth [Human Leukemia cell line, mouse embryonic stem cells (mESCs)] |
| SRP337018 | whole-genome wide DNA methylation aberration in HCC [liver] |
| SRP337159 | Homo sapiens Epigenomics [sperm] |
| SRP337501 | DNA methylation landscape and signature of CD4+ lymphocytes of lamina propria in Crohn's patients by reduced representation and bisulfite sequencing [BiSulfite-seq] [Isolated CD4+ cells] |
| SRP338189 | Deleting DNMT3A in CAR T cells prevents exhaustion and 1 enhances antitumor activity [T cells] |
| SRP338680 | Molecular profile of HepG2 cell line (IBMC) [liver] |
| SRP338853 | DNA methylation of MOLM-13 cells [cell line] |
| SRP339574 | Methylation Mediated Silencing of Protein Kinase C Zeta Induces Apoptosis Avoidance through ATM/Chk-2 Inactivation in Dedifferentiated Chondrosarcoma [human chondrosarcoma cell line] |
| SRP341621 | LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA [Plasma separated from blood] |
| SRP342964 | scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation [blood] |
| SRP345048 | Antigen cross-presentation in young tumor-bearing hosts promotes CD8 T cell terminal differentiation [WGBS] [Germ Cell Tumor] |
| SRP346828 | NOMe-HiC: joint profiling of genetic variants, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule [lung fibroblast cell line] |
| SRP346999 | Whole genome bilsufite sequencing of sgTET2 HepG2 [missing] |
| SRP348645 | Transcriptomic and Epigenomic Profiles of CIC-knockout and IDH1 mutant cells [WGBS] [Immortalized Astrocyte Cells] |
| SRP352189 | CRISPR-based targeted haplotype-resolved assembly of a megabase region [WGBS] [B cell] |
| SRP353040 | WGBS of control and DAC-treated tumor tissue from PDX model [colorectal cancer] |
| SRP353340 | NOMe-Seq analysis of IMR-90 cell line [IMR-90 nuclei treated with CCMT, IMR-90 nuclei without MTase treatment] |
| SRP353536 | Transcriptome and Bisulfite sequencing of drug treated breast cancer cell lines [mammary gland] |
| SRP353670 | DNA Methylation Potential Energy Landscape Analysis of MLL-rearranged Acute Myeloid Leukemia (AML) and Normal hematopoietic precursors [WGBS] [primary] |
| SRP353982 | methyl-Seq of Pediatric ARDS Nasal and Bronchial Brushings [Bronchial, Nasal] |
| SRP356708 | Young vs Old Fibroblast WGBS [skin] |
| SRP357194 | HPV integration generates cellular super enhancer and functions as ecDNA to regulate genome-wide transcription [C33A, CaSki, HeLa, S12, SiHa] |
| SRP357363 | Whole-genome bisulfite sequencing anaysis of PSCs [Feeder-free PSC] |
| SRP357372 | WGBS and RNA-seq of HUVECs transfected with siNC or siTET2 [Human Umbilical Vein Endothelial Cells] |
| SRP358957 | WGBS of OLD and YOUNG primary Fibroblasts [ARM SKIN, Inguinal area, NS, Umbilical area] |
| SRP362494 | The aberrant epigenome of DNMT3B-mutated ICF1 patient iPSCs is amenable to correction, with the exception of a subset of regions with H3K4me3- and/or CTCF-based epigenetic memory (WGBS) [iPSCs] |
| SRP364929 | human rDNA obesity [Blood] |
| SRP367891 | DNA methylation analysis of malignant and normal uveal melanocytes reveals novel molecular features of uveal melanoma [Primary Culture, UM sorted cells] |
| SRP368308 | Lack of major genome-wide DNA methylation changes in succinate-treated human epithelial cells [Human Bronchial cells] |
| SRP373598 | GM12878 MultiOmics [blood] |
| SRP373708 | WGBS of primary and recurrent ovarian cancer tumors with and without BRCA1/2 mutations [ovarian cancer tumors] |
| SRP373924 | NOMe-Seq analysis of IMR-90 cell line II [IMR-90 nuclei treated with GCMT] |
| SRP375137 | DNMT3A-mediated DNA demethylation is required for hypoxia induced EMT of human cancer cells [SRS12996594, SRS12996595, SRS12996596, SRS12996597, SRS12996598, SRS12996599, SRS12996600, SRS12996601, SRS12996602, SRS12996603, SRS12996604, SRS12996605, SRS12996606, SRS12996607, SRS12996608, SRS12996609] |
| SRP376918 | Droplet-based bisulfite sequencing for high-throughput profiling of single-cell DNA methylomes [N.A.] |
| SRP377560 | Reversible epigenetic alterations mediate PSMA expression heterogeneity in advanced metastatic prostate cancer. [Prostate cancer patient derived xenograft] |
| SRP384348 | Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation [WGBS-Seq] [Ngn2_neurons, ebryonic stem cells, embryonic kidney cells] |
| SRP386415 | SELF-PATTERNING OF HUMAN STEM CELLS INTO POST-IMPLANTATION LINEAGES [Cell line] |
| SRP387154 | Accurate simultaneous sequencing of genetic and epigenetic bases in DNA [Blood] |
| SRP387319 | Dysfunction of 5-methylcytosine oxidases and the Polycomb protein RYBP leads to widespread DNA hypermethylation and cell transformation [WGBS] [Human Bronchial cells] |
| SRP387971 | Tonic-signaling chimeric antigen receptors drive human regulatory T cell exhaustion [CD4+ TCONV cells, CD4+ TREG cells] |
| SRP389118 | Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation [WGBS] [Esophageal adenocarcinoma, Esophageal squamous cell carcinoma] |
| SRP392105 | Placental ischemia disrupts DNA methylation patterns of distal regulatory regions in rat [Placenta, Planceta] |
| SRP394454 | Methylation profile of latent metastatic (Lat-M) cells from clear cell renal cell carcinoma (ccRCC) [kidney cancer cells] |
| SRP395427 | WGBS-seq and oxWGBS-seq Atlas for Oral Squamous Cell Carcinoma [OSCC tissue, normal adjacent tissue] |
| SRP396192 | DNA Methylation Profile of Lip Tissue from Congenital Non-syndromic Cleft Lip and Palate Patients by Whole Genome Bisulfite Sequencing [lip tissue] |
| SRP396408 | Neonatal necrotizing enterocolitis-associated DNA methylation signatures in the colon are evident in stool samples of affected individuals [colon tissue, stool] |
| SRP396513 | Rockfish: Detection of 5mC DNA Modifications Using Raw Nanopore Signal [Embryonic stem cell, purified cardiomyocyte] |
| SRP396738 | Highly efficient and rapid generation of human pluripotent stem cells by chemical reprogramming (WGBS) [adult human adipose derived mesenchymal stromal cells, human chemically induced pluripotent stem cells] |
| SRP397676 | Loss of tight junctions disrupts gastrulation patterning and increases differentiation towards the germ cell lineage in human pluripotent stem cells [Skin fibroblasts] |
| SRP397737 | Global hypermethylation of intestinal epithelial cells is a hallmark feature of neonatal surgical necrotizing enterocolitis [lcm_colon_ileum] [colon, ileum] |
| SRP398111 | to be updated [blood] |
| SRP400466 | Multiplex Epigenome Editing of MECP2 to Rescue Rett Syndrome Neurons (WGBS) [human embryonic stem cells] |
| SRP404930 | LN-stem, tumor stem, tumor terminally differentiated CD8 T cells from human kidney cancer [LN, PBMC, Spleen, TDLN, Tumor] |
| SRP405874 | Rebalancing TGFß1/BMP Signals Preserves Effector and Memory Programs in Terminally Dysfunctional CD8+ T Cells [Bisulfite-Seq] [Cord blood] |
| SRP405928 | Optimized bisulfite sequencing reveals the lack of 5-methylcytosine in mammalian mitochondrial DNA [WGBS] [Platelet, embryonic stem cell, human breast cancer cell, human embryonic kidney cell, human hepatocarcinoma cell, lung adenocarcinoma cell, melanoma cell, mouse brain, neuroblastoma cell] |
| SRP408041 | The catalytic activity of TET1 is required for human germ cell fate choice [Bisulfite-Seq] [hESC, hPGCLC] |
| SRP409096 | Epigenetic dynamics during capacitation of naïve human pluripotent stem cells [PBAT] [chemically reset hPSC, conventional hPSC, embryo-derived naive hPSC] |
| SRP415835 | Comprehensive sequence-based DNA methylation analysis suggests that PanIN lesions are acinar-derived and epigenetically primed for carcinogenesis [Pancreas] |
| SRP420728 | 5-hydroxymethylcytosines regulate gene expression as a passive DNA demethylation resisting epigenetic mark in proliferative somatic cells [methylation] [HEK293T] |
| SRP423445 | Ultrafast Bisulfite Sequencing for Efficient and Accurate 5-Methylcytosine Detection in DNA and RNA [mESC, plasma, stem cell] |
| SRP424257 | Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [1] [glioblastoma tumor] |
| SRP426514 | Epigenetic therapy activates TE-chimeric transcripts to provide additional source of antigens in glioblastoma stem cells [brain, skin] |
| SRP426633 | DNA methylation alterations in prostate cancer patient derived xenograft models revealed by whole genome bisulfite sequencing [Patient derived xenograft] |
| SRP430982 | Whole genome bisulfite sequencing data of blood cfDNA form 29 CRC and 9 Non-CRC patients. [blood] |
| SRP432935 | Epigenetic modification sequencing data of human U2OS cells [tibia] |
| SRP434804 | MECP2 directly interacts with RNA polymerase II to modulate transcription in human neurons [WGBS] [neuron] |
| SRP436137 | Malignant Transformation Drives DNA Methylation Loss and Transcriptional Activation of Transposable Element Loci [WGBS] [Neonatal Foreskin] |
| SRP439675 | NPC268 whole-genome bisulfite sequencing (WGBS) [Human nasopharyngeal carcinoma] |
| SRP440514 | TNRC18 recognizes H3K9me3 to mediate transposable elements silencing at ERV regions [WGBS] [Human embryonic kidney] |
| SRP441171 | Single-stranded Premethylated 5mC Adapters Uncovers the Methylation Profile of Plasma Ultrashort Single-Stranded Cell-Free DNA [Plasma] |
| SRP441209 | Omics analyses of stromal cells from ACM patients reveal alterations in chromatin organization and mitochondrial homeostasis [Bisulfite-Seq] [cardiac mesenchymal stromal cells] |
| SRP446321 | Non-canonical functions of UHRF1 maintain DNA methylation homeostasis in cancer cells [Colon] |
| SRP450395 | Epigenetic therapy targets the 3D epigenome in endocrine-resistant breast cancer [WGBS] [Breast cancer PDX model Gar15-13, Breast cancer PDX model HCI005] |
| SRP450683 | Epigenomic landscape of colorectal adenoma and cancer [colorectal] |
| SRP451599 | The effect of Histone H3.3 knockdown on DNA methylation in HepG2 cells [hepatoma cell] |
| SRP452335 | Epigenetic sequencing of allogeneic HSC-derived CAR-engineered NKT cells [BCAR-T, BCAR-iNKT, BCAR-iNKT-IL15] |
| SRP454277 | Characterisation and reproducibility of the HumanMethylationEPIC v2.0 BeadChip for DNA methylation profiling [WGBS] [Prostate tumour] |
| SRP456514 | A modular dCas9-based recruitment platform for combinatorial epigenome editing [human embyonic kidney] |
| SRP461642 | Whole genome bisulfite sequencing identifies stage- and subtype-specific DNA methylation signatures in pancreatic cancer [PanIN mouse organoid, normal pancreatic ductal mouse organoid, normal pancreatic ductal patient-derived organoid, pancreatic ductal adenocarcinoma mouse organoid, pancreatic ductal adenocarcinoma patient-derived organoid] |
| SRP461724 | Endogenous retrovirus LTR12C hold potential locus-dependent activities as promoter and/or enhancer [BiSulfite-seq] [Human Embryonic Kidney] |
| SRP462543 | iPSC-based modeling of preeclampsia identifies defects in extravillous trophoblast differentiation [Mesenchymal stem cell, iPSC derived extravillous trophoblast, iPSC derived trophoblast stem cell, iPSC reprogrammed from renal epithelial cells, iSPC reprogrammed from mesenchymal stem cell, placenta] |
| SRP464289 | DNMT3B PWWP mutations cause hypermethylation of heterochromatin (WGBS) [colorectal cancer cell line] |
| SRP464400 | Epigenetic signature of human vitamin D3 and IL-10-conditioned regulatory DCs [Leukapheresis products] |
| SRP467414 | DNA methylation profiling identifies TBKBP1 as potent amplifier of cytotoxic activity in CMV-specific human CD8+ T cells [peripheral blood] |
| SRP470181 | Hypermethylation of DNA impairs megakaryogenesis in delayed platelet recovery after allogeneic hematopoietic stem cell transplantation [Bone marrow] |
| SRP473783 | scNanoSeq-CUT&Tag: a long-read single-cell CUT&Tag sequencing method for efficient chromatin modification profiling within individual cells [blood] |
| SRP474233 | Identification of differentially expressed tumour-related genes regulated by UHRF1 regulated DNA methylation [WGBS] [Mammary gland] |
| SRP478956 | Divergent originations of parental DNA hydroxymethylation in human preimplantation embryos [human embryonic stem cells] |
| SRP485412 | PRC2-AgeIndex: a universal biomarker of aging and rejuvenation [WGBS] [dermal fibroblasts, foreskin fibroblasts] |
| SRP490076 | Persistent epigenome anomalies in induced pluripotent stem cells from late-onset sporadic Alzheimer's disease cases [BiSulfite-seq] [iPSC] |
| SRP490212 | UHRF1 ubiquitin ligase activity supports the maintenance of low-density CpG methylation [BiSulfite-seq] [Colorectal Carcinoma epithelial cells] |
| SRP491820 | Cell-free DNA Methylation Patterns in Aging and Their Association with Inflamm-aging [Plasma] |
| SRP494242 | Methylation changes induced by alpha-hemolysin from Staphylococcus aureus in human primary Th17 lymphocytes. [lymphocyte] |
| SRP494617 | methylGrapher: Genome-Graph-Based Processing of DNA Methylation Data from Whole Genome Bisulfite Sequencing [1000 Genomes LCL] |
| SRP496763 | Charting the regulatory landscape of TP53 on transposable elements in cancer [WGBS] [A549, HCT116, RKO] |
| SRP499337 | Repetitive element transcript accumulation is related to inflammaging in humans [PBMC] |
| SRP500704 | Bisulfite-Free Whole-Genome Mapping of 5-Methylcytosine at Single-Base Resolution by NTD-seq [cell line] |
| SRP503688 | Genome-wide DNA methylation seq data and RNA seq data in three paired HCC and normal tissue samples [HCC tissue, Paracancerous tissue] |
| SRP504106 | Mutant IDH1 inhibition induces reverse transcriptase and dsDNA sensing to activate tumor immunity [human WGBS] [cholangiocarcinoma] |
| SRP504674 | Generation of human spermatogonia from pluripotent stem cells [PGCLCs, xrTestis] |
| SRP504847 | Ectopic expression of DNMT3L in human trophoblast stem cells restores features of the placental methylome [PBAT BS-Seq] [Trophoblast stem cells] |
| SRP508090 | Epigenomic landscape of human cumulus cells in premature ovarian insufficiency using single-base resolution methylome and hydroxymethylome. [scWGBS_seq] [ovary] |
| SRP510440 | Tracking and mitigating imprint erasure during induction of naïve human pluripotency at single-cell resolution [Bisulfite-Seq] [hESC] |
| SRP510686 | A comparison of methylome data produced with tPBAT and sPBAT library preparation protocols. [sPBAT library prepared from IMR90 genomic DNA, tPBAT library prepared from IMR90 genomic DNA] |
| SRP510797 | Homo sapiens Raw sequence reads [kidney] |
| SRP510877 | High-Resolution Molecular Profiling of Epileptic Brain Activity via Explanted Depth Electrodes [Methylation] [Brain] |
| SRP511377 | Bisulfite seq of UHRF1 KO A549 cells [tumor cell] |
| SRP511776 | Patient TSC2 Mutant Cells Exhibit Aberrations in Early Neurodevelopment Accompanied by Changes in the DNA Methylome (Bisulfite-Seq) [iPSC-derived neural progenitor cells, induced pluripotent stem cells (iPSC)] |
| SRP514328 | DNA 5-methylcytosine regulates genome-wide formation of G-quadruplex structures [WGBS] [Human embryonic kidney] |
| SRP515320 | Epigenetic dysregulation of transposable elements in cognitive impairment and Alzheimer's disease [Isolated WBC] |
| SRP515825 | Mitochondria-localized MBD2c facilitates mtDNA transcription and drug resistance [Bisulfite-Seq] [MDA-MB-468] |
| SRP519334 | sciMETv3 Single-cell DNA Methylation Raw Sequence Reads [BA46] |
| SRP521100 | Continuous turnover and asynchronous aging of human memory T cells across tissues [jejunum, lung, mesenteric lymph node, spleen] |
| SRP521389 | Bisulfite-Free Whole-Genome Mapping of 5-Methylcytosine at Single-Base Resolution by TAD-seq [cell line] |
| SRP523710 | Rapid Human Oogonia-like Cell Specification via Combinatorial Transcription Factor-Directed Differentiation [BiSulfite-seq] [DDX4+ induced oogonia-like cells, DDX4+ induced oogonia-like cells (no DNMT1i), DDX4+ induced oogonia-like cells, naive reset, hPGCLC, hiPSC_naivereset, hiPSC_primed] |
| SRP523753 | Vitamin C promotes epidermal proliferation by enhancing the DNA demethylation of proliferation-related genes in human epidermal equivalents (WGBS) [SRS22229878, SRS22229879, SRS22229880, SRS22229881, SRS22229882, SRS22229883, SRS22229884, SRS22229885, SRS22229886, SRS22229887, SRS22229888, SRS22229889] |
| SRP526064 | Valine-restricted diet regulates DNA methylation [Bisulfite-Seq] [HCT116] |
| SRP531388 | Inferring DNA methylation in non-skeletal tissues of ancient specimens [bone (femur)] |
| SRP533334 | Methylation patterns of the nasal epigenome of hospitalized SARS-CoV-2 positive patients reveal insights into molecular mechanisms of COVID-19 [Nasopharyngeal swab] |
| SRP543819 | Seminal Plasma cell-free DNA [Seminal Plasma] |
| SRP551395 | Clonorchis sinensis infection alters the methylation and hydroxymethylation of hepatocellular carcinoma [HCC adjacent tissue, HCC tumor tissue] |
| SRP551562 | DNA Methylation Profiling at Base-Pair Resolution Reveals Unique Epigenetic Features of Early-Onset Colorectal Cancer in Underrepresented Populations [Moderately differentiated rectal adenocarcinoma, Moderately differentiated rectosigmoid adenocarcinoma, Moderately differentiated sigmoid colon cancer, Normal adjacent colonic mucosal, Normal adjacent rectal, Normal adjacent rectosigmoid, Normal adjacent sigmoid, Rectal adenocarcinoma arising from tubulovillous adenoma with high grade dysplasia] |
| SRP559414 | The myoblast methylome: Multiple types of associations with chromatin and transcription [skeletal muscle] |
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