UCSC Genome Browser on Ambystoma mexicanum Assembly, June 2018 (Amex_PQ.v4)
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chr1P:270,923,278-270,932,588 9,311 bp.

  
-   Hub: Organism Ambystoma mexicanum
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-   Hub: Track Collections No Info  
ATT state @ het
Homozygous
ATT state @ hom
Heterozygous
Colony coverage
ATT coverage
Regeneration
Gonad
-   Gene_Models
GeneModels
-   Mapping and Sequencing
Base Position
Restr Enzymes
Short Match
-   Nowosh_assembly
Scaffolds
Gaps
-   Transcriptome_alignments
Nowoshilow_trans
sal-site_trans
Bryant_trans
-   RNAseq PRJNA300706 (regeneration map, Broad Institute, Bryant)
Bryant_Bone_255
Bryant_blood_vessel_904
Bryant_blood_vessel_905
Bryant_blood_vessel_906
Bryant_Bone_256
Bryant_Bone_257
Bryant_CartLong_258
Bryant_CartLong_259
Bryant_CartLong_260
Bryant_CartWrist_261
Bryant_CartWrist_262
Bryant_CartWrist_263
Bryant_distal_1
Bryant_distal_2
Bryant_elbow_10325
Bryant_elbow_10328
Bryant_forearm_10321
Bryant_forearm_10324
Bryant_gillfilament_10319
Bryant_hand_10320
Bryant_hand_10323
Bryant_hand_10327
Bryant_heart_907
Bryant_heart_908
Bryant_heart_909
Bryant_Ovaries_218
Bryant_Ovaries_219
Bryant_Ovaries_220
Bryant_proximal_1
Bryant_proximal_2
Bryant_skeletal_900
Bryant_skeletal_901
Bryant_skeletal_902
Bryant_skeletal_903
Bryant_Testes_250
Bryant_Testes_251
Bryant_Testes_253
Bryant_Testes_254
Bryant_upperarm_10322
Bryant_upperarm_10326
Bryant_upperarm_10329
-   RNAseq PRJNA480225 (limb regeneration, University of Kentucky, Dwaraka)
Dwaraka_RegenD1_rep1
Dwaraka_RegenD1_rep2
Dwaraka_RegenD1_rep3
Dwaraka_RegenD2_rep1
Dwaraka_RegenD2_rep2
Dwaraka_RegenD2_rep3
Dwaraka_RegenD3_rep1
Dwaraka_RegenD3_rep2
Dwaraka_RegenD3_rep3
Dwaraka_RegenD4_rep1
Dwaraka_RegenD4_rep2
Dwaraka_RegenD4_rep3
Dwaraka_RegenD5_rep1
Dwaraka_RegenD5_rep2
Dwaraka_RegenD5_rep3
Dwaraka_uninjured_rep1
Dwaraka_uninjured_rep2
Dwaraka_uninjured_rep3
-   RNAseq PRJNA378982 (Institute of Molecular Pathology, Nowoshilow)
Nowoshilow_brain
Nowoshilow_CellCult_n
Nowoshilow_CellCult_o
Nowoshilow_flimb_blastema15dpa
Nowoshilow_flimb_blastema9dpa
Nowoshilow_head
Nowoshilow_heart
Nowoshilow_injured_sp_cord1dpa
Nowoshilow_injured_sp_cord6dpa
Nowoshilow_islets
Nowoshilow_limb_bud
Nowoshilow_liver
Nowoshilow_lung
Nowoshilow_ovary_B
Nowoshilow_spinalcord
Nowoshilow_spleen
Nowoshilow_tail_bud
Nowoshilow_tailblastema8dpa
Nowoshilow_testes
Nowoshilow_w_embryo_St10
Nowoshilow_w_embryo_St19
-   RNAseq PRJNA354434 (Langebio-Cinvestav)
Langebio_front_leg
Langebio_gill
Langebio_heart
Langebio_liver
Langebio_rear_leg
Langebio_tail
-   Nanopore RNA long reads
Nanopore_RNA_tailfin
-   WG_reads_alignment
48hybrids_1kb_mean_norm55
48hybrids_chr1
AGCS_1kb_mean_norm20
AGSC_WG_coverage
AM_repeats
Amex_DD151_1kb_mean_norm7
Amex_DD151_cov
A.tigrinum coverage
ATT_mean1kb_norm7
-   SNPs density per kb
A.tig_as_AGSC_AGSC_homoz
A.tig_as_AGSC_at_AGSC_het
A.tig_as_dd_at_AGSC_het
A.tig_as_dd_at_AGSC_homoz
het_A.tig
het_AGSC
het_dd
homoz_A.tig
homoz_AGSC
homoz_dd
-   SEQUENCE VARIANTS (SNPs and small indels)
A.tig_SNPs
AGSC_SNPs
dd_SNPs
-   Epigenetics tracks (Please visit Sal-Site for guidance on fair use of these pre-publication datasets)
12Hr_WGBS
24Hr_WGBS
H3K27ac
H3K27ac_reconstruct
H3K9ac
RNA_PolII
uninj_WGBS
-   other
H3K27ac peaks
H3K9ac peaks
RNA_PolII peaks
           
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