Configure Image - Genome Browser V480
 
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Configure Tracks on UCSC Genome Browser: Rhesus Feb. 2019 (Mmul_10/rheMac10)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Gap Gap Locations
Assembly Assembly from Fragments
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
Tandem Dups Paired identical sequences
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-Rhesus RefSeq Genes
TOGA vs. hg38 TOGA annotations using human/hg38 as reference
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Rhesus ESTs Rhesus ESTs Including Unspliced
Rhesus mRNAs Rhesus mRNAs from GenBank
Spliced ESTs Rhesus ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
ClinVar Lift Human ClinVar variants lifted to Rhesus
hg19 ChainNet Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments
Human Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
mm10 ChainNet Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Mouse Chain/Net Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments
Hawaiian monk seal Chain/Net Hawaiian monk seal (Jun. 2017 (ASM220157v1/neoSch1)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Rhesus SNVs Annotated SNVs from the Rhesus Macaque Sequencing Consortium
new EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust