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Configure Tracks on UCSC Genome Browser: Ebola virus Sierra Leone 2014 (G3683/KM034562.1/eboVir3)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing Tracks    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence (CAGCAGCAGCAGCAGCAG)
-   Genes and Gene Prediction Tracks    
NCBI Genes NCBI Genes from KM034562 GenBank Record
PDB Protein Data Bank (PDB) Sequence Matches
muPIT protein map muPIT - Mapping Genomic Positions on Protein Structures
Pfam in NCBI Gene Pfam Domains in NCBI Genes
UniProt UniProt SwissProt/TrEMBL Protein Annotations
UniProt UniProt/SwissProt Annotations
-   Immunology    
IEDB B Cell Immune Epitope Database and Analysis Resource (IEDB) B-Cell Epitopes
IEDB B Cell Neg Immune Epitope Database and Analysis Resource (IEDB) B-Cell Epitopes with Negative Assay Result
IEDB T Cell I Immune Epitope Database and Analysis Resource (IEDB) Curated T-Cell Epitopes, MHC Class I
IEDB T Cell II Immune Epitope Database and Analysis Resource (IEDB) Curated T-Cell Epitopes, MHC Class II
IEDB Prediction Immune Epitope Database and Analysis Resource (IEDB) HLA binding predictions
     IEDB Pred II     IEDB Epitope Predictions, Human T-Cell Class II
     IEDB Pred Macaque I     IEDB Epitope Predictions, Macaque T-Cell Class I
     IEDB Pred Human I     IEDB Epitope Predictions, Human T-Cell Class I
-   Literature    
Lens Patents Lens PatSeq Patent Document Sequences
-   Comparative Genomics    
160 Accessions Multiz Alignment & Conservation (160 Virus Strains, Accession Names)
160 Strains Multiz Alignment & Conservation (160 Virus Strains, Strain Names)
New sequences Recent related sequences from GenBank
-   Variation and Repeats    
2014 Specific Sites that Carry a Unique Base in 81 Sequences from 2014 Outbreak
2014 Variants Variants from 81 Sequences from 2014 Outbreak
2014 Missense Protein Changing Variants from 81 Sequences from 2014 Outbreak
Zaire Variants Variants from 81 Sequences from 2014 Outbreak and 20 Zaire-clade Sequences 1976-2008
Zaire Missense Protein Changing Variants from 81 Sequences from 2014 Outbreak and 20 Zaire-clade Sequences 1976-2008
2014 Intra-host Intra-host variants for 78 sequences from Sierra Leone 2014 Outbreak
2014 Fixed Aa Chg Protein Changes That Are Fixed in 81 Sequences from 2014 Outbreak
2014 Polym Aa Chg Protein Changes That Are Polymorphic in 81 Sequences from 2014 Outbreak
2014 vs Kikwit GP Protein Changes in GP Between 81 Sequences from 2014 Outbreak and Kikwit 1995 (JQ352763)
2014 vs Maynga GP Protein Changes in GP Between 81 Sequences from 2014 Outbreak and Mayinga 1976 (NC002549)
UniProt Mutations UniProt/SwissProt Amino Acid Substitutions