Configure Image - Genome Browser V481
 
Image width:pixels
Label area width:characters
Text size:
Font:
Style:
Tooltip text size:
Maximum track load time: seconds
Display chromosome ideogram above main graphic
Show light blue vertical guidelines, or light red vertical window separators in multi-region view
Display labels to the left of items in tracks
Display description above each track
Show track controls under main graphic
Next/previous item navigation
Next/previous exon navigation
Show exon numbers
Show move left/right limit buttons under image
Enable highlight with drag-and-select (if unchecked, drag-and-select always zooms to selection)
Enable pop-up when clicking items

Configure Tracks on UCSC Genome Browser: D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Hub: Track Collections    
analysis220420___FACS_data___checking_browser_tracks___uH2A New Collection (1) description
analysis220420___FACS_data___checking_browser_tracks___RNAPolIIser2phos New Collection (2) description
analysis220420___FACS_data___checking_browser_tracks___rbp3 New Collection (3) description
analysis220420___FACS_data___checking_browser_tracks___H3K9me2 New Collection description
analysis220420___FACS_data___checking_browser_tracks___H3K27me3 New Collection description
H3K27me3___FACS_220706 New Collection description
H3K9me2___FACS_220706 New Collection (1) description
rpb3___FACS_220706 New Collection description
uH2A___FACS_220706 New Collection description
RNAPolIIser2phos___FACS_220706 New Collection description
H4K16Ac___FACS_220706 New Collection description
JA904 just recoloring the track New Collection description
H3K27me3...Gate4...FACS_220706 just recoloring track New Collection description
uH2A_230418 uH2A_230418
H3K9me2_230418 New Collection (1) description
H3K27me3_230418 New Collection (2) description
H4K16Ac_230418 New Collection description
RNAPolIIser2phos_230418 RNAPolIIser2phos_230418
H3K4me2_230418 H3K4me2_230418
RNAPII_230508 RNAPII_230508
-   Custom Tracks    
FACS_MERGE___RNAPolIIser2phos___Gate1___JA743_JA744_JA764_JA765___SCALED_TO___Gate4.bw FACS_MERGE___RNAPolIIser2phos___Gate1___JA743_JA744_JA764_JA765___SCALED_TO___Gate4.bw
FACS_MERGE___RNAPolIIser2phos___Gate1___JA743_JA744_JA764_JA765_JA812_JA842___coverage___SCALED_TO_Gate4.bw FACS_MERGE___RNAPolIIser2phos___Gate1___JA743_JA744_JA764_JA765_JA812_JA842___coverage___SCALED_TO_Gate4.bw
FACS_MERGE___RNAPolIIser2phos___Gate2___JA740_JA763___SCALED_TO___Gate4.bw FACS_MERGE___RNAPolIIser2phos___Gate2___JA740_JA763___SCALED_TO___Gate4.bw
FACS_MERGE___RNAPolIIser2phos___Gate3___JA732_JA741_JA762___SCALED_TO___Gate4.bw FACS_MERGE___RNAPolIIser2phos___Gate3___JA732_JA741_JA762___SCALED_TO___Gate4.bw
FACS_MERGE___RNAPolIIser2phos___Gate3___JA732_JA741_JA762_JA810_JA841___coverage___SCALED_TO_Gate4.bw FACS_MERGE___RNAPolIIser2phos___Gate3___JA732_JA741_JA762_JA810_JA841___coverage___SCALED_TO_Gate4.bw
FACS_MERGE___RNAPolIIser2phos___Gate4___JA664_JA665_JA666_JA667.bw FACS_MERGE___RNAPolIIser2phos___Gate4___JA664_JA665_JA666_JA667.bw
FACS_MERGE___RNAPolIIser2phos___Gate4___JA664_JA665_JA666_JA667_JA839.bw FACS_MERGE___RNAPolIIser2phos___Gate4___JA664_JA665_JA666_JA667_JA839.bw
FACS_MERGE___RNAPolIIser2phos___Gate5___JA668_JA742___SCALED_TO___Gate4.bw FACS_MERGE___RNAPolIIser2phos___Gate5___JA668_JA742___SCALED_TO___Gate4.bw
FACS_MERGE___RNAPolIIser2phos___Gate5___JA668_JA742_JA809_JA840___coverage___SCALED_TO_Gate4.bw FACS_MERGE___RNAPolIIser2phos___Gate5___JA668_JA742_JA809_JA840___coverage___SCALED_TO_Gate4.bw
FACS_MERGE___uH2A___Gate1___JA737_JA793_JA738_JA794_JA800.bw FACS_MERGE___uH2A___Gate1___JA737_JA793_JA738_JA794_JA800.bw
FACS_MERGE___uH2A___Gate1___JA737_JA793_JA738_JA794_JA800_JA831___coverage.bw FACS_MERGE___uH2A___Gate1___JA737_JA793_JA738_JA794_JA800_JA831___coverage.bw
FACS_MERGE___uH2A___Gate2___JA696_JA736_JA792___SCALED_TO___Gate1.bw FACS_MERGE___uH2A___Gate2___JA696_JA736_JA792___SCALED_TO___Gate1.bw
FACS_MERGE___uH2A___Gate3___JA735_JA791___SCALED_TO___Gate1.bw FACS_MERGE___uH2A___Gate3___JA735_JA791___SCALED_TO___Gate1.bw
FACS_MERGE___uH2A___Gate3___JA735_JA791_JA829___coverage___SCALED_TO___Gate1.bw FACS_MERGE___uH2A___Gate3___JA735_JA791_JA829___coverage___SCALED_TO___Gate1.bw
FACS_MERGE___uH2A___Gate4___JA688_JA761___SCALED_TO___Gate1.bw FACS_MERGE___uH2A___Gate4___JA688_JA761___SCALED_TO___Gate1.bw
FACS_MERGE___uH2A___Gate4___JA688_JA761_JA808_JA827___SCALED_TO___Gate1.bw FACS_MERGE___uH2A___Gate4___JA688_JA761_JA808_JA827___SCALED_TO___Gate1.bw
FACS_MERGE___uH2A___Gate5___JA690_JA734_JA790___SCALED_TO___Gate1.bw FACS_MERGE___uH2A___Gate5___JA690_JA734_JA790___SCALED_TO___Gate1.bw
FACS_MERGE___uH2A___Gate5___JA690_JA734_JA790_JA828___coverage___SCALED_TO___Gate1.bw FACS_MERGE___uH2A___Gate5___JA690_JA734_JA790_JA828___coverage___SCALED_TO___Gate1.bw
H3K27me3...Gate1...FACS_220706 H3K27me3...Gate1...FACS_220706
H3K27me3...Gate3...FACS_220706 H3K27me3...Gate3...FACS_220706
H3K27me3...Gate4...FACS_220706 H3K27me3...Gate4...FACS_220706
H3K27me3...Gate5...FACS_220706 H3K27me3...Gate5...FACS_220706
H3K9me2...Gate1...FACS_220706 H3K9me2...Gate1...FACS_220706
H3K9me2...Gate4...FACS_220706 H3K9me2...Gate4...FACS_220706
H3K9me2...Gate5...FACS_220706 H3K9me2...Gate5...FACS_220706
H4K16Ac...Gate1...FACS_220706 H4K16Ac...Gate1...FACS_220706
H4K16Ac...Gate3...FACS_220706 H4K16Ac...Gate3...FACS_220706
H4K16Ac...Gate4...FACS_220706 H4K16Ac...Gate4...FACS_220706
H4K16Ac...Gate5...FACS_220706 H4K16Ac...Gate5...FACS_220706
JA237_coverage.bw JA237_coverage.bw
JA251_coverage.bw JA251_coverage.bw
JA279_dupsremoved_coverage.bw JA279_dupsremoved_coverage.bw
JA279_JA280_JA288_JA289___MERGED_DUPSREMOVED___coverage.bw JA279_JA280_JA288_JA289___MERGED_DUPSREMOVED___coverage.bw
JA281_JA282_JA283_JA284_JA285_JA229___MERGED_DUPSRETAINED_coverage.bw JA281_JA282_JA283_JA284_JA285_JA229___MERGED_DUPSRETAINED_coverage.bw
JA316_coverage.bw JA316_coverage.bw
JA332_JA336_JA346___MERGED_DUPSRETAINED.bw JA332_JA336_JA346___MERGED_DUPSRETAINED.bw
JA332_JA336_JA346___MERGED_DUPSRETAINED___coverage.bw JA332_JA336_JA346___MERGED_DUPSRETAINED___coverage.bw
JA333_JA334_JA338___MERGED_DUPSRETAINED.bw JA333_JA334_JA338___MERGED_DUPSRETAINED.bw
JA333_JA334_JA338___MERGED_DUPSRETAINED___coverage.bw JA333_JA334_JA338___MERGED_DUPSRETAINED___coverage.bw
JA348_JA349_JA350_JA351_JA356___MERGED_DUPSREMOVED.bw JA348_JA349_JA350_JA351_JA356___MERGED_DUPSREMOVED.bw
JA353_asBAM.bw JA353_asBAM.bw
JA357_asBAM_sorted.bw JA357_asBAM_sorted.bw
JA366_JA367_JA370_JA371___MERGED_DUPSREMOVED.bw JA366_JA367_JA370_JA371___MERGED_DUPSREMOVED.bw
JA417_JA418_JA419___MERGED_DUPSRETAINED___asBAM_coverage.bw JA417_JA418_JA419___MERGED_DUPSRETAINED___asBAM_coverage.bw
JA638_asBAM_sorted.bw JA638_asBAM_sorted.bw
JA643_asBAM_sorted_coverage.bw JA643_asBAM_sorted_coverage.bw
JA643_asBAM_sorted_dupsremoved.bw JA643_asBAM_sorted_dupsremoved.bw
JA644_asBAM_sorted_coverage.bw JA644_asBAM_sorted_coverage.bw
JA644_asBAM_sorted_dupsremoved.bw JA644_asBAM_sorted_dupsremoved.bw
JA645_asBAM_sorted_coverage.bw JA645_asBAM_sorted_coverage.bw
JA645_asBAM_sorted_dupsremoved.bw JA645_asBAM_sorted_dupsremoved.bw
JA647_asBAM_sorted_coverage.bw JA647_asBAM_sorted_coverage.bw
JA648_asBAM_sorted_coverage.bw JA648_asBAM_sorted_coverage.bw
JA649_asBAM_sorted_coverage.bw JA649_asBAM_sorted_coverage.bw
JA652_asBAM_sorted_coverage.bw JA652_asBAM_sorted_coverage.bw
JA653_asBAM_sorted_coverage.bw JA653_asBAM_sorted_coverage.bw
JA664_asBAM_sorted_coverage.bw JA664_asBAM_sorted_coverage.bw
JA668_asBAM_sorted_coverage.bw JA668_asBAM_sorted_coverage.bw
JA700_asBAM_sorted_dupsremoved.bw JA700_asBAM_sorted_dupsremoved.bw
JA701_asBAM_sorted_dupsremoved___SCALED_to_JA700.bw JA701_asBAM_sorted_dupsremoved___SCALED_to_JA700.bw
JA702_asBAM_sorted_dupsremoved___SCALED_to_JA700.bw JA702_asBAM_sorted_dupsremoved___SCALED_to_JA700.bw
JA703_asBAM_sorted_dupsremoved___SCALED_to_JA700.bw JA703_asBAM_sorted_dupsremoved___SCALED_to_JA700.bw
JA704_asBAM_sorted_dupsremoved___SCALED_to_JA700.bw JA704_asBAM_sorted_dupsremoved___SCALED_to_JA700.bw
JA706_asBAM_sorted_dupsremoved___SCALED_to_JA711.bw JA706_asBAM_sorted_dupsremoved___SCALED_to_JA711.bw
JA707_asBAM_sorted_dupsremoved___SCALED_to_JA711.bw JA707_asBAM_sorted_dupsremoved___SCALED_to_JA711.bw
JA709_asBAM_sorted_dupsremoved___SCALED_to_JA711.bw JA709_asBAM_sorted_dupsremoved___SCALED_to_JA711.bw
JA710_asBAM_sorted_dupsremoved___SCALED_to_JA711.bw JA710_asBAM_sorted_dupsremoved___SCALED_to_JA711.bw
JA712_asBAM_sorted_dupsremoved.bw JA712_asBAM_sorted_dupsremoved.bw
JA713_asBAM_sorted_dupsremoved___SCALED_TO___JA712.bw JA713_asBAM_sorted_dupsremoved___SCALED_TO___JA712.bw
JA714_asBAM_sorted_dupsremoved___SCALED_TO___JA712.bw JA714_asBAM_sorted_dupsremoved___SCALED_TO___JA712.bw
JA715_asBAM_sorted_dupsremoved___SCALED_TO___JA712.bw JA715_asBAM_sorted_dupsremoved___SCALED_TO___JA712.bw
JA716_asBAM_sorted_dupsremoved___SCALED_TO___JA712.bw JA716_asBAM_sorted_dupsremoved___SCALED_TO___JA712.bw
JA743_asBAM_sorted_dupsremoved.bw JA743_asBAM_sorted_dupsremoved.bw
JA814_asBAM_sorted_dupsremoved_coverage___SCALED_TO___JA818.bw JA814_asBAM_sorted_dupsremoved_coverage___SCALED_TO___JA818.bw
JA815_asBAM_sorted_dupsremoved_coverage___SCALED_TO___JA818.bw JA815_asBAM_sorted_dupsremoved_coverage___SCALED_TO___JA818.bw
JA816_asBAM_sorted_dupsremoved_coverage___SCALED_TO___JA818.bw JA816_asBAM_sorted_dupsremoved_coverage___SCALED_TO___JA818.bw
JA818_asBAM_sorted_dupsremoved_coverage.bw JA818_asBAM_sorted_dupsremoved_coverage.bw
JA904...IgG...Gate4...FACS_221010_try2 JA904...IgG...Gate4...FACS_221010_try2
RNAPolIIser2phos...Gate1...FACS_220706 RNAPolIIser2phos...Gate1...FACS_220706
RNAPolIIser2phos...Gate3...FACS_220706 RNAPolIIser2phos...Gate3...FACS_220706
RNAPolIIser2phos...Gate4...FACS_220706 RNAPolIIser2phos...Gate4...FACS_220706
RNAPolIIser2phos...Gate5...FACS_220706 RNAPolIIser2phos...Gate5...FACS_220706
rpb3...Gate1...FACS_220706 rpb3...Gate1...FACS_220706
rpb3...Gate3...FACS_220706 rpb3...Gate3...FACS_220706
rpb3...Gate4...FACS_220706 rpb3...Gate4...FACS_220706
rpb3...Gate5...FACS_220706 rpb3...Gate5...FACS_220706
uH2A...Gate1...FACS_220706 uH2A...Gate1...FACS_220706
uH2A...Gate3...FACS_220706 uH2A...Gate3...FACS_220706
uH2A...Gate4...FACS_220706 uH2A...Gate4...FACS_220706
uH2A...Gate5...FACS_220706 uH2A...Gate5...FACS_220706
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Chromosome Band Chromosome Bands
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
updated NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
CRISPR CRISPR/Cas9 Sp. Pyog. target sites
     CRISPR Targets     CRISPR/Cas9 -NGG Targets
     CRISPR Regions     Genome regions processed to find CRISPR/Cas9 target sites (exons +/- 200 bp)
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-D. melanogaster RefSeq Genes
Pfam in RefSeq Pfam Domains in RefSeq Genes
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Spliced ESTs D. melanogaster ESTs That Have Been Spliced
D. melanogaster ESTs D. melanogaster ESTs Including Unspliced
D. melanogaster mRNAs D. melanogaster mRNAs from GenBank
Other mRNAs Non-D. melanogaster mRNAs from GenBank
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
ORegAnno Regulatory elements from ORegAnno
ReMap ChIP-seq ReMap Atlas of Regulatory Regions
-   Comparative Genomics    
Conservation Multiz Alignment & Conservation (27 Species)
Cons 124 Insects Multiz Alignment & Conservation (124 insects)
Insects Chain/Net Insects Chain and Net Alignments
-   Variation and Repeats    
EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
UniProt Variants UniProt/SwissProt Amino Acid Substitutions
WM + SDust Genomic Intervals Masked by WindowMasker + SDust
RepeatMasker Repeating Elements by RepeatMasker