table bigRmskAlignBed
"Repetitive Element Alignment Auxilary Data" 
    (
    string  chrom;        "Reference sequence chromosome or scaffold" 
    uint    chromStart;    "Start position of alignment on chromosome" 
    uint    chromEnd;    "End position of alignment on chromosome" 
    uint    chromRemain;    "Remaining bp in the chromosome or scaffold" 
    float   score;          "alignment score (sw, bits or evalue)" 
    float   percSubst;      "Base substitution percentage" 
    float   percDel;        "Base deletion percentage" 
    float   percIns;        "Bases insertion percentage" 
    char[1] strand;         "Strand - either + or -" 
    string  repName;        "Name of repeat" 
    string  repType;        "Type of repeat" 
    string  repSubtype;     "Subtype of repeat" 
    uint    repStart;       "Start in repeat sequence" 
    uint    repEnd;         "End in repeat sequence" 
    uint    repRemain;      "Remaining unaligned bp in the repeat sequence" 
    uint    id;             "The ID of the hit. Used to link related fragments" 
    lstring calignData;     "The alignment data stored as a single string" 
    )