track assembly type bigBed 6 longLabel Assembly color 150,100,30 altColor 230,170,40 bigDataUrl araTha1.assembly.bb priority 10 html assembly group map shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 track cytoBand type bigBed 4 + longLabel Ideogram bigDataUrl araTha1.cytoBandIdeo.bb group map shortLabel Chromosome Band visibility dense track cytoBandIdeo type bigBed 4 + longLabel Ideogram for Orientation bigDataUrl araTha1.cytoBandIdeo.bb group map shortLabel Chromosome Band (Ideogram) visibility dense track gap type bigBed 4 longLabel Gap color 0,0,0 bigDataUrl araTha1.gap.bb priority 11 html gap group map shortLabel Gap visibility dense track gc5Base type bigWig 0 100 longLabel GC Percent in 5-Base Windows viewLimits 30:70 autoScale Off color 0,0,0 altColor 128,128,128 bigDataUrl araTha1.gc5Base.bw priority 23.5 graphTypeDefault Bar html gc5Base gridDefault OFF group map maxHeightPixels 128:36:16 windowingFunction Mean shortLabel GC Percent visibility full track simpleRepeat type bigBed 4 + longLabel Simple Tandem Repeats by TRF bigDataUrl araTha1.simpleRepeat.bb priority 149.3 html simpleRepeat group varRep shortLabel Simple Repeats visibility dense track genscan type bigBed 12 . longLabel Genscan Gene Predictions color 170,100,0 bigDataUrl araTha1.genscan.bb priority 50 html genscan group genes shortLabel Genscan Genes visibility pack track cpgIslandExt type bigBed 4 + longLabel CpG Islands (Islands < 300 Bases are Light Green) color 0,100,0 altColor 128,228,128 bigDataUrl araTha1.cpgIslandExt.bb priority 90 html cpgIslandExt group regulation shortLabel CpG Islands visibility pack track repeatMasker noInherit on type bed 3 . longLabel Repeating Elements by RepeatMasker priority 149.1 compositeTrack on html repeatMasker group varRep shortLabel RepeatMasker visibility dense track repeatMaskerSINE type bigBed 6 + longLabel SINE Repeating Elements by RepeatMasker parent repeatMasker bigDataUrl araTha1.rmsk.SINE.bb priority 1 maxWindowToDraw 10000000 spectrum on shortLabel SINE colorByStrand 50,50,150 150,50,50 track repeatMaskerLINE type bigBed 6 + longLabel LINE Repeating Elements by RepeatMasker parent repeatMasker bigDataUrl araTha1.rmsk.LINE.bb priority 2 maxWindowToDraw 10000000 spectrum on shortLabel LINE colorByStrand 50,50,150 150,50,50 track repeatMaskerLTR type bigBed 6 + longLabel LTR Repeating Elements by RepeatMasker parent repeatMasker bigDataUrl araTha1.rmsk.LTR.bb priority 3 maxWindowToDraw 10000000 spectrum on shortLabel LTR colorByStrand 50,50,150 150,50,50 track repeatMaskerDNA type bigBed 6 + longLabel DNA Repeating Elements by RepeatMasker parent repeatMasker bigDataUrl araTha1.rmsk.DNA.bb priority 4 maxWindowToDraw 10000000 spectrum on shortLabel DNA colorByStrand 50,50,150 150,50,50 track repeatMaskerSimple type bigBed 6 + longLabel Simple Repeating Elements by RepeatMasker parent repeatMasker bigDataUrl araTha1.rmsk.Simple.bb priority 5 maxWindowToDraw 10000000 spectrum on shortLabel Simple colorByStrand 50,50,150 150,50,50 track repeatMaskerLowComplexity type bigBed 6 + longLabel Low Complexity Repeating Elements by RepeatMasker parent repeatMasker bigDataUrl araTha1.rmsk.LowComplexity.bb priority 6 maxWindowToDraw 10000000 spectrum on shortLabel Low Complexity colorByStrand 50,50,150 150,50,50 track repeatMaskerSatellite type bigBed 6 + longLabel Satellite Repeating Elements by RepeatMasker parent repeatMasker bigDataUrl araTha1.rmsk.Satellite.bb priority 7 maxWindowToDraw 10000000 spectrum on shortLabel Satellite colorByStrand 50,50,150 150,50,50 track repeatMaskerRNA type bigBed 6 + longLabel RNA Repeating Elements by RepeatMasker parent repeatMasker bigDataUrl araTha1.rmsk.RNA.bb priority 8 maxWindowToDraw 10000000 spectrum on shortLabel RNA colorByStrand 50,50,150 150,50,50 track repeatMaskerOther type bigBed 6 + longLabel Other Repeating Elements by RepeatMasker parent repeatMasker bigDataUrl araTha1.rmsk.Other.bb priority 9 maxWindowToDraw 10000000 spectrum on shortLabel Other colorByStrand 50,50,150 150,50,50 track windowMasker type bigBed 3 . longLabel Genomic Intervals Masked by WindowMasker + SDust bigDataUrl araTha1.windowMasker.bb priority 149.26 html windowMasker group varRep shortLabel WM + SDust visibility dense track blatBraRap1 type bigBed 12 . longLabel lift-over blat to braRap1 bigDataUrl blatAraTha1ToBraRap1.bb priority 160 group compGeno shortLabel blat braRap1 visibility dense track blatRicCom1 type bigBed 12 . longLabel lift-over blat to ricCom1 bigDataUrl araTha1ToRicCom1.bb priority 170 group compGeno shortLabel blat ricCom1 visibility dense track lastzBraRap1 type bigBed 12 . longLabel lastz chain to braRap1 bigDataUrl lastzAraTha1ToBraRap1.bb priority 150 group compGeno shortLabel lastz braRap1 visibility dense track ensGene type bigBed 12 . longLabel Ensembl genes from Arabidopsis_thaliana.TAIR10.18.gtf.gz color 150,0,0 bigDataUrl ensGene.araTha1.bb searchTrix ensGene.araTha1.ix priority 40 searchIndex name group genes shortLabel Ensembl genes visibility pack