Library Protocol: Lab specific protocol that may cover a number of steps in an experiment. Most typically this identifies methods for building a DNA or RNA library.
ProtocolDescriptionLabel
CIP-TAP This kind of library was made from RNA < 200 nucleotides that was pre-treated sequentially with Calf Intestinal Alkaline Phosphatase followed by Tobacco Acid Pyrophosphatase. Hence, it will be enriched for capped RNAs. CIP-TAP
FASP Filter-Assisted Sample Preparation (FASP) proteomics protocol (Giddings) FASP
In-gel In-gel digestion proteomics protocol (Giddings) In-gel digestion
MudPIT Multidimensional Protein Identification Technology (MudPIT) proteomics protocol (Giddings) MudPIT
PCR1x one 15-cycle round of PCR (Myers) PCR 1-round
PCR2x a 25-cycle round of PCR and an additional 15-cycle round of PCR after gel size selection (Myers) PCR 2-round
SDS-Page SDS-Page proteomics sample preparation protocol (Giddings) SDS-Page proteomics sample
TAP-Only This kind of library was made from RNA < 200 nucleotides that were pre-treated with Tobacco Acid Pyrophosphatase to remove any 5' caps that would preclude cloning. Hence, both capped and 5' monophosphate RNAs will be cloned. Tobacco Acid Pyrophosphatase Only
v041610.1 2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers) biorupter, PCR 1-round
v041610.2 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers) sonicator, PCR 1-round
v042211.1 Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers) ChIP AMpure XP
v042211.2 Faster ChIP protocol & gel size selection for ChIP-seq (Myers) ChIP gel

Total = 12