Human Gene ACTG1 (ENST00000573283.7_14) from GENCODE V47lift37
  Description: actin gamma 1, transcript variant 2 (from RefSeq NM_001614.5)
Gencode Transcript: ENST00000573283.7_14
Gencode Gene: ENSG00000184009.13_20
Transcript (Including UTRs)
   Position: hg19 chr17:79,476,997-79,479,825 Size: 2,829 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr17:79,477,716-79,479,380 Size: 1,665 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:79,476,997-79,479,825)mRNA (may differ from genome)Protein (375 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ACTG_HUMAN
DESCRIPTION: RecName: Full=Actin, cytoplasmic 2; AltName: Full=Gamma-actin; Contains: RecName: Full=Actin, cytoplasmic 2, N-terminally processed;
FUNCTION: Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
SUBUNIT: Polymerization of globular actin (G-actin) leads to a structural filament (F-actin) in the form of a two-stranded helix. Each actin can bind to 4 others.
INTERACTION: Self; NbExp=2; IntAct=EBI-351292, EBI-351292; Q9Y281:CFL2; NbExp=2; IntAct=EBI-351292, EBI-351218; P40692:MLH1; NbExp=7; IntAct=EBI-351292, EBI-744248;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton.
PTM: The methylhistidine determined by Bienvenut et al is assumed to be the tele-methylhistidine isomer by similarity to the mouse ortholog.
PTM: Oxidation of Met-44 by MICALs (MICAL1, MICAL2 or MICAL3) to form methionine sulfoxide promotes actin filament depolymerization. Methionine sulfoxide is produced stereospecifically, but it is not known whether the (S)-S-oxide or the (R)-S-oxide is produced (By similarity).
DISEASE: Defects in ACTG1 are the cause of deafness autosomal dominant type 20 (DFNA20) [MIM:604717]; also called autosomal dominant deafness type 26 (DFNA26). DFNA20 is a form of sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information.
DISEASE: Defects in ACTG1 are the cause of Baraitser-Winter syndrome type 2 (BRWS2) [MIM:614583]. A rare developmental disorder characterized by the combination of congenital ptosis, high-arched eyebrows, hypertelorism, ocular colobomata, and a brain malformation consisting of anterior-predominant lissencephaly. Other typical features include postnatal short stature and microcephaly, intellectual disability, seizures, and hearing loss.
MISCELLANEOUS: In vertebrates 3 main groups of actin isoforms, alpha, beta and gamma have been identified. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins coexist in most cell types as components of the cytoskeleton and as mediators of internal cell motility.
SIMILARITY: Belongs to the actin family.
WEB RESOURCE: Name=Mendelian genes actin, gamma 1 (ACTG1); Note=Leiden Open Variation Database (LOVD); URL="http://www.lovd.nl/ACTG1";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ACTG1
Diseases sorted by gene-association score: baraitser-winter syndrome 2* (1330), deafness, autosomal dominant 20/26* (1200), autosomal dominant nonsyndromic deafness 20* (419), dfna20/26 nonsyndromic hearing loss and deafness* (100), autosomal dominant non-syndromic sensorineural deafness type dfna* (66), baraitser-winter syndrome (60), microlissencephaly (9), hypotonia-cystinuria syndrome (6), childhood leukemia (6), autosomal dominant nonsyndromic deafness (5), giant axonal neuropathy (5), nonsyndromic deafness (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1608.40 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 33633.66 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -10.9072-0.151 Picture PostScript Text
3' UTR -218.40719-0.304 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004000 - Actin-like
IPR020902 - Actin/actin-like_CS
IPR004001 - Actin_CS

Pfam Domains:
PF00022 - Actin

SCOP Domains:
53067 - Actin-like ATPase domain

ModBase Predicted Comparative 3D Structure on P63261
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0005200 structural constituent of cytoskeleton
GO:0005515 protein binding
GO:0005522 profilin binding
GO:0005524 ATP binding
GO:0031625 ubiquitin protein ligase binding
GO:0042802 identical protein binding

Biological Process:
GO:0001895 retina homeostasis
GO:0009612 response to mechanical stimulus
GO:0034329 cell junction assembly
GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0045214 sarcomere organization
GO:0048013 ephrin receptor signaling pathway
GO:0051592 response to calcium ion
GO:0061024 membrane organization
GO:0070527 platelet aggregation
GO:0071346 cellular response to interferon-gamma

Cellular Component:
GO:0005615 extracellular space
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005884 actin filament
GO:0005886 plasma membrane
GO:0005925 focal adhesion
GO:0015629 actin cytoskeleton
GO:0016020 membrane
GO:0030016 myofibril
GO:0031941 filamentous actin
GO:0043209 myelin sheath
GO:0045335 phagocytic vesicle
GO:0070062 extracellular exosome
GO:0072562 blood microparticle
GO:0097433 dense body


-  Descriptions from all associated GenBank mRNAs
  BC009544 - Homo sapiens, clone IMAGE:3897065, mRNA, partial cds.
BC010417 - Homo sapiens actin, gamma 1, mRNA (cDNA clone IMAGE:4053240), partial cds.
BC004223 - Homo sapiens actin, gamma 1, mRNA (cDNA clone IMAGE:3533309), complete cds.
BC063495 - Homo sapiens actin, gamma 1, mRNA (cDNA clone IMAGE:5398241).
BC001920 - Homo sapiens actin, gamma 1, mRNA (cDNA clone MGC:3728 IMAGE:2820489), complete cds.
BC015779 - Homo sapiens actin, gamma 1, mRNA (cDNA clone MGC:23584 IMAGE:4856294), complete cds.
BC053572 - Homo sapiens actin, gamma 1, mRNA (cDNA clone MGC:61615 IMAGE:3865767), complete cds.
BC015005 - Homo sapiens actin, gamma 1, mRNA (cDNA clone MGC:23578 IMAGE:4855463), complete cds.
BC009848 - Homo sapiens actin, gamma 1, mRNA (cDNA clone MGC:15376 IMAGE:3939552), complete cds.
BC007442 - Homo sapiens actin, gamma 1, mRNA (cDNA clone MGC:4484 IMAGE:2962953), complete cds.
BC012050 - Homo sapiens actin, gamma 1, mRNA (cDNA clone MGC:19847 IMAGE:4554944), complete cds.
BC015695 - Homo sapiens actin, gamma 1, mRNA (cDNA clone MGC:23184 IMAGE:4842665), complete cds.
BC018774 - Homo sapiens actin, gamma 1, mRNA (cDNA clone MGC:32064 IMAGE:4869628), complete cds.
X04098 - Homo sapiens mRNA for cytoskeletal gamma-actin (ACTG1 gene).
BC023548 - Homo sapiens actin, gamma 1, mRNA (cDNA clone IMAGE:4109821), partial cds.
BC039144 - Homo sapiens actin, gamma 1, mRNA (cDNA clone IMAGE:3866554), with apparent retained intron.
BC017450 - Homo sapiens, clone IMAGE:3538275, mRNA, partial cds.
BC010999 - Homo sapiens actin, gamma 1, mRNA (cDNA clone MGC:15377 IMAGE:3940861), complete cds.
BC000292 - Homo sapiens actin, gamma 1, mRNA (cDNA clone MGC:8332 IMAGE:2819345), complete cds.
BC018861 - Homo sapiens actin, gamma 1, mRNA (cDNA clone IMAGE:3141563).
E02117 - cDNA encoding human cell differentiation inducer.
EU668331 - Homo sapiens epididymis luminal protein 176 (HEL-176) mRNA, complete cds.
M16247 - Human gamma-actin mRNA, partial cds.
AK301175 - Homo sapiens cDNA FLJ58286 complete cds, highly similar to Actin, cytoplasmic 2.
JD362656 - Sequence 343680 from Patent EP1572962.
JD027566 - Sequence 8590 from Patent EP1572962.
JD030782 - Sequence 11806 from Patent EP1572962.
AK291937 - Homo sapiens cDNA FLJ78508 complete cds.
AK304637 - Homo sapiens cDNA FLJ57283 complete cds, highly similar to Actin, cytoplasmic 2.
DQ571000 - Homo sapiens piRNA piR-31112, complete sequence.
DQ585569 - Homo sapiens piRNA piR-52681, complete sequence.
JD565068 - Sequence 546092 from Patent EP1572962.
JD358888 - Sequence 339912 from Patent EP1572962.
JD028684 - Sequence 9708 from Patent EP1572962.
JD027454 - Sequence 8478 from Patent EP1572962.
JD186596 - Sequence 167620 from Patent EP1572962.
BT019856 - Homo sapiens actin, gamma 1 mRNA, complete cds.
DQ891374 - Synthetic construct clone IMAGE:100004004; FLH176328.01X; RZPDo839C01122D actin, gamma 1 (ACTG1) gene, encodes complete protein.
KJ896370 - Synthetic construct Homo sapiens clone ccsbBroadEn_05764 ACTG1 gene, encodes complete protein.
KJ905681 - Synthetic construct Homo sapiens clone ccsbBroadEn_15351 ACTG1 gene, encodes complete protein.
KR711165 - Synthetic construct Homo sapiens clone CCSBHm_00020917 ACTG1 (ACTG1) mRNA, encodes complete protein.
KR711166 - Synthetic construct Homo sapiens clone CCSBHm_00020919 ACTG1 (ACTG1) mRNA, encodes complete protein.
KR711167 - Synthetic construct Homo sapiens clone CCSBHm_00020920 ACTG1 (ACTG1) mRNA, encodes complete protein.
KR711168 - Synthetic construct Homo sapiens clone CCSBHm_00020922 ACTG1 (ACTG1) mRNA, encodes complete protein.
EU176631 - Synthetic construct Homo sapiens clone IMAGE:100011619; FLH263907.01L; RZPDo839C03246D actin, gamma 1 (ACTG1) gene, encodes complete protein.
EU832621 - Synthetic construct Homo sapiens clone HAIB:100067650; DKFZo008B0831 actin, gamma 1 protein (ACTG1) gene, encodes complete protein.
EU832693 - Synthetic construct Homo sapiens clone HAIB:100067722; DKFZo004B0832 actin, gamma 1 protein (ACTG1) gene, encodes complete protein.
KJ904414 - Synthetic construct Homo sapiens clone ccsbBroadEn_13808 ACTG1 gene, encodes complete protein.
CU676328 - Synthetic construct Homo sapiens gateway clone IMAGE:100021914 5' read ACTG1 mRNA.
JD026553 - Sequence 7577 from Patent EP1572962.
JD019916 - Sequence 940 from Patent EP1572962.
JD026552 - Sequence 7576 from Patent EP1572962.
JD027653 - Sequence 8677 from Patent EP1572962.
JD035199 - Sequence 16223 from Patent EP1572962.
JD035285 - Sequence 16309 from Patent EP1572962.
JD395645 - Sequence 376669 from Patent EP1572962.
JD323213 - Sequence 304237 from Patent EP1572962.
JD022362 - Sequence 3386 from Patent EP1572962.
JD559041 - Sequence 540065 from Patent EP1572962.
JD431762 - Sequence 412786 from Patent EP1572962.
DL491922 - Novel nucleic acids.
CU680176 - Synthetic construct Homo sapiens gateway clone IMAGE:100017126 5' read ACTG1 mRNA.
DL490485 - Novel nucleic acids.
JD056756 - Sequence 37780 from Patent EP1572962.
JD021564 - Sequence 2588 from Patent EP1572962.
JD025516 - Sequence 6540 from Patent EP1572962.
JD027349 - Sequence 8373 from Patent EP1572962.
DQ585304 - Homo sapiens piRNA piR-52416, complete sequence.
JD024403 - Sequence 5427 from Patent EP1572962.
DQ585303 - Homo sapiens piRNA piR-52415, complete sequence.
JD023304 - Sequence 4328 from Patent EP1572962.
DQ585302 - Homo sapiens piRNA piR-52414, complete sequence.
JD031607 - Sequence 12631 from Patent EP1572962.
JD025385 - Sequence 6409 from Patent EP1572962.
JD029524 - Sequence 10548 from Patent EP1572962.
JD031969 - Sequence 12993 from Patent EP1572962.
JD031507 - Sequence 12531 from Patent EP1572962.
DQ600289 - Homo sapiens piRNA piR-38355, complete sequence.
DL490817 - Novel nucleic acids.
JD021647 - Sequence 2671 from Patent EP1572962.
JD030576 - Sequence 11600 from Patent EP1572962.
DQ589977 - Homo sapiens piRNA piR-57089, complete sequence.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_HivnefPathway - HIV-I Nef: negative effector of Fas and TNF

Reactome (by CSHL, EBI, and GO)

Protein P63261 (Reactome details) participates in the following event(s):

R-HSA-203070 Association of profilin with monomeric actin
R-HSA-442592 WASPs or WAVEs activate the ARP2/3 complex
R-HSA-3928595 N-WASP binds ARP2/3 and G-actin
R-HSA-5665659 RAC1:GTP:FMNL1 binds profilin:G-actin
R-HSA-5665751 CDC42:GTP:FMNL2 binds Profilin:G-actin
R-HSA-5665767 Activated FMNL3 binds G-actin
R-HSA-5666001 Profilin:G-actin binds MKL1
R-HSA-5665809 SRGAP2 stimulates RAC1 GTP-ase activity and ends FMNL1-mediated elongation of actin filaments
R-HSA-2029466 Attachment of preexisting mother filament and initiation of branching
R-HSA-2197690 Detachment of WASP/WAVE
R-HSA-5665802 SRGAP2 binds RAC1:GTP:FMNL1:profilin:G-actin
R-HSA-5665982 RHOA:GTP:DIAPH1 binds EVL and sequesters profilin:G-actin from MKL1
R-HSA-5663220 RHO GTPases Activate Formins
R-HSA-2029482 Regulation of actin dynamics for phagocytic cup formation
R-HSA-5663213 RHO GTPases Activate WASPs and WAVEs
R-HSA-3928662 EPHB-mediated forward signaling
R-HSA-195258 RHO GTPase Effectors
R-HSA-2029480 Fcgamma receptor (FCGR) dependent phagocytosis
R-HSA-2682334 EPH-Ephrin signaling
R-HSA-194315 Signaling by Rho GTPases
R-HSA-168249 Innate Immune System
R-HSA-422475 Axon guidance
R-HSA-162582 Signal Transduction
R-HSA-168256 Immune System
R-HSA-1266738 Developmental Biology

-  Other Names for This Gene
  Alternate Gene Symbols: A8K7C2, ACTG, ACTG_HUMAN, ENST00000573283.1, ENST00000573283.2, ENST00000573283.3, ENST00000573283.4, ENST00000573283.5, ENST00000573283.6, NM_001614, P02571, P14104, P63261, P99022, Q5U032, Q96E67, uc326cjm.1, uc326cjm.2
UCSC ID: ENST00000573283.7_14
RefSeq Accession: NM_001614.5
Protein: P63261 (aka ACTG_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ACTG1:
baraitser-winter (Baraitser-Winter Cerebrofrontofacial Syndrome)
deafness-overview (Genetic Hearing Loss Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.