Human Gene CDC20 (ENST00000310955.11_4) from GENCODE V47lift37
  Description: cell division cycle 20 (from RefSeq NM_001255.3)
Gencode Transcript: ENST00000310955.11_4
Gencode Gene: ENSG00000117399.14_7
Transcript (Including UTRs)
   Position: hg19 chr1:43,824,652-43,828,874 Size: 4,223 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr1:43,824,887-43,828,800 Size: 3,914 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:43,824,652-43,828,874)mRNA (may differ from genome)Protein (499 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
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-  Comments and Description Text from UniProtKB
  ID: CDC20_HUMAN
DESCRIPTION: RecName: Full=Cell division cycle protein 20 homolog; AltName: Full=p55CDC;
FUNCTION: Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: Found in a complex with CDC20, CDC27, SPATC1 and TUBG1. Interacts with SPATC1. Interacts with NEUROD2 (By similarity). Interacts with MAD2L1 and BUB1B. The phosphorylated form interacts with APC/C. Interacts with NINL. May interact with MAD2L2. Interacts with CDK5RAP2. Interacts with isoform 1 of NEK2.
INTERACTION: O60566:BUB1B; NbExp=8; IntAct=EBI-367462, EBI-1001438; P30260:CDC27; NbExp=6; IntAct=EBI-367462, EBI-994813; Q13257:MAD2L1; NbExp=5; IntAct=EBI-367462, EBI-78203; Q9UI95:MAD2L2; NbExp=2; IntAct=EBI-367462, EBI-77889; Q9NS23-2:RASSF1; NbExp=2; IntAct=EBI-367462, EBI-438698; Q8IXJ6-2:SIRT2; NbExp=2; IntAct=EBI-367462, EBI-5240785;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome. Cytoplasm, cytoskeleton, spindle pole.
DEVELOPMENTAL STAGE: Synthesis is initiated at G1/S, protein level peaks in M phase and protein is abruptly degraded at M/G1 transition.
PTM: Phosphorylated during mitosis, probably by maturation promoting factor (MPF). Phosphorylated by BUB1 at Ser-41; Ser-72; Ser-92; Ser-153; Thr-157 and Ser-161. Phosphorylated by NEK2.
PTM: Dephosphorylated by CTDP1.
PTM: Ubiquitinated and degraded by the proteasome during spindle assembly checkpoint. Deubiquitinated by USP44, leading to stabilize the MAD2L1-CDC20-APC/C ternary complex, thereby preventing premature activation of the APC/C. Ubiquitinated at Lys-490 during prometaphase. Ubiquitination at Lys-485 and Lys-490 has no effect on its ability to bind the APC/C completo bind the APC/C complex.
SIMILARITY: Belongs to the WD repeat CDC20/Fizzy family.
SIMILARITY: Contains 7 WD repeats.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/CDC20ID40003ch1p34.html";
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/cdc20/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 49.18 RPKM in Testis
Total median expression: 156.88 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -31.6075-0.421 Picture PostScript Text
3' UTR -3.7074-0.050 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015943 - WD40/YVTN_repeat-like_dom
IPR001680 - WD40_repeat
IPR019775 - WD40_repeat_CS
IPR017986 - WD40_repeat_dom

Pfam Domains:
PF00400 - WD domain, G-beta repeat
PF12894 - Anaphase-promoting complex subunit 4 WD40 domain

SCOP Domains:
50370 - Ricin B-like lectins
50952 - Soluble quinoprotein glucose dehydrogenase
50960 - TolB, C-terminal domain
63825 - YWTD domain
63829 - Calcium-dependent phosphotriesterase
69304 - Tricorn protease N-terminal domain
101898 - NHL repeat
50965 - Galactose oxidase, central domain
75011 - 3-carboxy-cis,cis-mucoante lactonizing enzyme
101908 - Putative isomerase YbhE
117289 - Nucleoporin domain
50969 - YVTN repeat-like/Quinoprotein amine dehydrogenase
50974 - Nitrous oxide reductase, N-terminal domain
50978 - WD40 repeat-like
50993 - Peptidase/esterase 'gauge' domain
69322 - Tricorn protease domain 2
50998 - Quinoprotein alcohol dehydrogenase-like
51004 - C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
82171 - DPP6 N-terminal domain-like

ModBase Predicted Comparative 3D Structure on Q12834
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008022 protein C-terminus binding
GO:0010997 anaphase-promoting complex binding
GO:0019899 enzyme binding
GO:0042826 histone deacetylase binding
GO:0097027 ubiquitin-protein transferase activator activity

Biological Process:
GO:0007049 cell cycle
GO:0007064 mitotic sister chromatid cohesion
GO:0007399 nervous system development
GO:0008284 positive regulation of cell proliferation
GO:0016567 protein ubiquitination
GO:0016579 protein deubiquitination
GO:0030154 cell differentiation
GO:0031145 anaphase-promoting complex-dependent catabolic process
GO:0031915 positive regulation of synaptic plasticity
GO:0040020 regulation of meiotic nuclear division
GO:0050773 regulation of dendrite development
GO:0051301 cell division
GO:0090129 positive regulation of synapse maturation
GO:0090307 mitotic spindle assembly
GO:1904668 positive regulation of ubiquitin protein ligase activity

Cellular Component:
GO:0000922 spindle pole
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0032991 macromolecular complex
GO:0048471 perinuclear region of cytoplasm
GO:0005680 anaphase-promoting complex


-  Descriptions from all associated GenBank mRNAs
  LF206584 - JP 2014500723-A/14087: Polycomb-Associated Non-Coding RNAs.
AK303844 - Homo sapiens cDNA FLJ51449 complete cds, highly similar to Cell division cycle protein 20 homolog.
BC001088 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:2830 IMAGE:2964686), complete cds.
BC012827 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:4503 IMAGE:2964686), complete cds.
AK302539 - Homo sapiens cDNA FLJ59100 complete cds, highly similar to Cell division cycle protein 20 homolog.
U05340 - Human p55CDC mRNA, complete cds.
BC010044 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:19761 IMAGE:3634656), complete cds.
LF206586 - JP 2014500723-A/14089: Polycomb-Associated Non-Coding RNAs.
BC009425 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:15275 IMAGE:2959460), complete cds.
BC009426 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:15276 IMAGE:2959596), complete cds.
BC012803 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:2777 IMAGE:2959588), complete cds.
BC013303 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:4441 IMAGE:2959588), complete cds.
BC024257 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:15441 IMAGE:2959460), complete cds.
BC031294 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:15304 IMAGE:2959487), complete cds.
AK312780 - Homo sapiens cDNA, FLJ93197, highly similar to Homo sapiens CDC20 cell division cycle 20 homolog (S. cerevisiae) (CDC20), mRNA.
AK225504 - Homo sapiens mRNA for Cell division cycle protein 20 homolog, clone: KAT01593.
BC015998 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:27217 IMAGE:4306426), complete cds.
BC110321 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:102824 IMAGE:5496957), complete cds.
BC000624 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:3076 IMAGE:3346682), complete cds.
BC006272 - Homo sapiens cell division cycle 20 homolog (S. cerevisiae), mRNA (cDNA clone MGC:10620 IMAGE:3948819), complete cds.
AF099644 - Homo sapiens cell cycle protein CDC20 mRNA, complete cds.
AB590358 - Synthetic construct DNA, clone: pFN21AE1433, Homo sapiens CDC20 gene for cell division cycle 20 homolog, without stop codon, in Flexi system.
EU831712 - Synthetic construct Homo sapiens clone HAIB:100066741; DKFZo003D1220 cell division cycle 20 homolog (S. cerevisiae) protein (CDC20) gene, encodes complete protein.
DQ892290 - Synthetic construct clone IMAGE:100004920; FLH184914.01X; RZPDo839D03146D CDC20 cell division cycle 20 homolog (S. cerevisiae) (CDC20) gene, encodes complete protein.
DQ895489 - Synthetic construct Homo sapiens clone IMAGE:100009949; FLH184910.01L; RZPDo839D03145D CDC20 cell division cycle 20 homolog (S. cerevisiae) (CDC20) gene, encodes complete protein.
EU831627 - Synthetic construct Homo sapiens clone HAIB:100066656; DKFZo007D1219 cell division cycle 20 homolog (S. cerevisiae) protein (CDC20) gene, encodes complete protein.
CU675321 - Synthetic construct Homo sapiens gateway clone IMAGE:100020310 5' read CDC20 mRNA.
CU679585 - Synthetic construct Homo sapiens gateway clone IMAGE:100017371 5' read CDC20 mRNA.
CU674302 - Synthetic construct Homo sapiens gateway clone IMAGE:100018353 5' read CDC20 mRNA.
KJ890877 - Synthetic construct Homo sapiens clone ccsbBroadEn_00271 CDC20 gene, encodes complete protein.
KJ896576 - Synthetic construct Homo sapiens clone ccsbBroadEn_05970 CDC20 gene, encodes complete protein.
KJ896577 - Synthetic construct Homo sapiens clone ccsbBroadEn_05971 CDC20 gene, encodes complete protein.
BT007388 - Homo sapiens CDC20 cell division cycle 20 homolog (S. cerevisiae) mRNA, complete cds.
LF356385 - JP 2014500723-A/163888: Polycomb-Associated Non-Coding RNAs.
LF356383 - JP 2014500723-A/163886: Polycomb-Associated Non-Coding RNAs.
LF356382 - JP 2014500723-A/163885: Polycomb-Associated Non-Coding RNAs.
LF356381 - JP 2014500723-A/163884: Polycomb-Associated Non-Coding RNAs.
LF356380 - JP 2014500723-A/163883: Polycomb-Associated Non-Coding RNAs.
LF206583 - JP 2014500723-A/14086: Polycomb-Associated Non-Coding RNAs.
LF356378 - JP 2014500723-A/163881: Polycomb-Associated Non-Coding RNAs.
MA442161 - JP 2018138019-A/14087: Polycomb-Associated Non-Coding RNAs.
MA442163 - JP 2018138019-A/14089: Polycomb-Associated Non-Coding RNAs.
MA591962 - JP 2018138019-A/163888: Polycomb-Associated Non-Coding RNAs.
MA591960 - JP 2018138019-A/163886: Polycomb-Associated Non-Coding RNAs.
MA591959 - JP 2018138019-A/163885: Polycomb-Associated Non-Coding RNAs.
MA591958 - JP 2018138019-A/163884: Polycomb-Associated Non-Coding RNAs.
MA591957 - JP 2018138019-A/163883: Polycomb-Associated Non-Coding RNAs.
MA442160 - JP 2018138019-A/14086: Polycomb-Associated Non-Coding RNAs.
MA591955 - JP 2018138019-A/163881: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q12834 (Reactome details) participates in the following event(s):

R-HSA-141429 Inactivation of APC/C via CDC20 sequestration
R-HSA-141437 Formation of the MCC complex
R-HSA-174224 Dissociation of Cdc20 from APC/C complex
R-HSA-174235 Association of Emi1 with Cdc20
R-HSA-141423 Binding of the MCC complex to the APC/C complex
R-HSA-174120 Association of Cyclin B:Cdc2 with Cdc20:APC/C complex
R-HSA-174121 Association of Securin with Cdc20:APC/C complex
R-HSA-174238 Activation of APC/C:Cdc20 by dissociation of Cdc20:phospho-APC/C from Cdc20:phospho-APC/C:Mad2:Bub3:BubR1
R-HSA-141409 Mad1 binds kinetochore
R-HSA-375302 Kinetochore capture of astral microtubules
R-HSA-5666129 CDC42:GTP recruits DIAPH2-2 to kinetochores
R-HSA-5666169 Kinetochore capture of astral microtubules is positively regulated by CDC42:GTP:p-S196-DIAPH2-2
R-HSA-174088 Association of cell cycle proteins with the APC/C:Cdh1 complex
R-HSA-5696958 USP44 deubiquitinates CDC20
R-HSA-174171 Association of Cyclin A with the APC/C
R-HSA-179410 Association of Nek2A with MCC:APC/C
R-HSA-174227 Ubiquitination of Cyclin B by phospho-APC/C:Cdc20 complex
R-HSA-174144 Ubiquitination of Securin by phospho-APC/C:Cdc20 complex
R-HSA-141431 MAD2 associates with the Mad1 kinetochore complex
R-HSA-141439 Release of activated MAD2 from kinetochores
R-HSA-2467811 Separation of sister chromatids
R-HSA-2467809 ESPL1 (Separase) cleaves centromeric cohesin
R-HSA-5666160 AURKB phosphorylates DIAPH2-2 at kinetochores
R-HSA-174195 Ubiquitination of cell cycle proteins targeted by the APC/C:Cdh1complex
R-HSA-174174 Phosphorylation of the Emi1 DSGxxS degron by Plk1
R-HSA-174122 Phosphorylation of the Emi1 DSGxxS degron by Cyclin B:Cdc2
R-HSA-174104 Ubiquitination of Cyclin A by APC/C:Cdc20 complex
R-HSA-179417 Multiubiquitination of Nek2A
R-HSA-141422 MAD2 converted to an inhibitory state via interaction with Mad1
R-HSA-1638821 PP2A-B56 dephosphorylates centromeric cohesin
R-HSA-1638803 Phosphorylation of cohesin by PLK1 at centromeres
R-HSA-2468287 CDK1 phosphorylates CDCA5 (Sororin) at centromeres
R-HSA-174209 Phosphorylated Emi1 binds the beta-TrCP in the SCF complex
R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-983147 Release of E3 from polyubiquitinated substrate
R-HSA-174159 Ubiquitination of Emi1 by SCF-beta-TrCP
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-141405 Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components
R-HSA-141430 Inactivation of APC/C via direct inhibition of the APC/C complex
R-HSA-176407 Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase
R-HSA-176408 Regulation of APC/C activators between G1/S and early anaphase
R-HSA-174048 APC/C:Cdc20 mediated degradation of Cyclin B
R-HSA-174154 APC/C:Cdc20 mediated degradation of Securin
R-HSA-2467813 Separation of Sister Chromatids
R-HSA-176409 APC/C:Cdc20 mediated degradation of mitotic proteins
R-HSA-141444 Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
R-HSA-68877 Mitotic Prometaphase
R-HSA-5663220 RHO GTPases Activate Formins
R-HSA-174178 APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1
R-HSA-174113 SCF-beta-TrCP mediated degradation of Emi1
R-HSA-69618 Mitotic Spindle Checkpoint
R-HSA-174143 APC/C-mediated degradation of cell cycle proteins
R-HSA-5689880 Ub-specific processing proteases
R-HSA-174184 Cdc20:Phospho-APC/C mediated degradation of Cyclin A
R-HSA-179409 APC-Cdc20 mediated degradation of Nek2A
R-HSA-68882 Mitotic Anaphase
R-HSA-176814 Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins
R-HSA-2500257 Resolution of Sister Chromatid Cohesion
R-HSA-141424 Amplification of signal from the kinetochores
R-HSA-68886 M Phase
R-HSA-195258 RHO GTPase Effectors
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-453276 Regulation of mitotic cell cycle
R-HSA-5688426 Deubiquitination
R-HSA-176417 Phosphorylation of Emi1
R-HSA-179419 APC:Cdc20 mediated degradation of cell cycle proteins prior to satisfation of the cell cycle checkpoint
R-HSA-2555396 Mitotic Metaphase and Anaphase
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-194315 Signaling by Rho GTPases
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-1640170 Cell Cycle
R-HSA-597592 Post-translational protein modification
R-HSA-162582 Signal Transduction
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-392499 Metabolism of proteins
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B2R6Z6, CDC20_HUMAN, D3DPJ1, ENST00000310955.1, ENST00000310955.10, ENST00000310955.2, ENST00000310955.3, ENST00000310955.4, ENST00000310955.5, ENST00000310955.6, ENST00000310955.7, ENST00000310955.8, ENST00000310955.9, NM_001255, Q12834, Q5JUY4, Q9BW56, Q9UQI9, uc317owh.1, uc317owh.2
UCSC ID: ENST00000310955.11_4
RefSeq Accession: NM_001255.3
Protein: Q12834 (aka CDC20_HUMAN or CC20_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.