Human Gene E2F2 (ENST00000361729.3_7) from GENCODE V47lift37
  Description: E2F transcription factor 2 (from RefSeq NM_004091.4)
Gencode Transcript: ENST00000361729.3_7
Gencode Gene: ENSG00000007968.7_9
Transcript (Including UTRs)
   Position: hg19 chr1:23,832,930-23,857,725 Size: 24,796 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr1:23,836,372-23,857,285 Size: 20,914 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:23,832,930-23,857,725)mRNA (may differ from genome)Protein (437 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: E2F2_HUMAN
DESCRIPTION: RecName: Full=Transcription factor E2F2; Short=E2F-2;
FUNCTION: Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC- 3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DRTF1/E2F complex functions in the control of cell-cycle progression from g1 to s phase. E2F2 binds specifically to RB1 in a cell-cycle dependent manner.
SUBUNIT: Component of the DRTF1/E2F transcription factor complex. Forms heterodimers with DP family members. The E2F2 complex binds specifically hypophosphorylated retinoblastoma protein RB1. During the cell cycle, RB1 becomes phosphorylated in mid-to-late G1 phase, detaches from the DRTF1/E2F complex, rendering E2F transcriptionally active. Viral oncoproteins, notably E1A, T- antigen and HPV E7, are capable of sequestering RB1, thus releasing the active complex. Binds EAPP.
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Highest level of expression is found in placenta, low levels are found in lung. Found as well in many immortalized cell lines derived from tumor samples.
PTM: Phosphorylated by CDK2 and cyclin A-CDK2 in the S-phase (By similarity).
SIMILARITY: Belongs to the E2F/DP family.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/e2f2/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: E2F2
Diseases sorted by gene-association score: retinoblastoma (13), retinal cancer (4), hepatocellular carcinoma (2), sensory system cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D000082 Acetaminophen
  • D013749 Tetrachlorodibenzodioxin
  • C517041 (4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II)
  • C028474 1,4-bis(2-(3,5-dichloropyridyloxy))benzene
  • C029497 2,3-bis(3'-hydroxybenzyl)butyrolactone
  • C009505 4,4'-diaminodiphenylmethane
  • C027576 4-hydroxy-2-nonenal
  • C553817 7-(benzylamino)-1,3,4,8-tetrahydropyrrolo(4,3,2-de)quinolin-8(1H)-one
  • D016604 Aflatoxin B1
  • D001151 Arsenic
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.20 RPKM in Esophagus - Mucosa
Total median expression: 32.94 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -222.60440-0.506 Picture PostScript Text
3' UTR -1320.403442-0.384 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR015633 - E2F
IPR003316 - E2F_TDP
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF02319 - E2F/DP family winged-helix DNA-binding domain
PF16421 - E2F transcription factor CC-MB domain

SCOP Domains:
46785 - "Winged helix" DNA-binding domain
144074 - E2F-DP heterodimerization region

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1N4M - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q14209
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001047 core promoter binding
GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0008134 transcription factor binding
GO:0043565 sequence-specific DNA binding
GO:0046983 protein dimerization activity
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0007049 cell cycle
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0051726 regulation of cell cycle
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator
GO:1903671 negative regulation of sprouting angiogenesis
GO:1990086 lens fiber cell apoptotic process

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005667 transcription factor complex
GO:0090575 RNA polymerase II transcription factor complex


-  Descriptions from all associated GenBank mRNAs
  BC053676 - Homo sapiens E2F transcription factor 2, mRNA (cDNA clone MGC:61488 IMAGE:6170186), complete cds.
L22846 - Homo sapiens transcription factor E2F-2 mRNA, complete cds (clone 9).
AK313939 - Homo sapiens cDNA, FLJ94581, Homo sapiens E2F transcription factor 2 (E2F2), mRNA.
BT019523 - Homo sapiens E2F transcription factor 2 mRNA, complete cds.
AB463593 - Synthetic construct DNA, clone: pF1KB7745, Homo sapiens E2F2 gene for E2F transcription factor 2, without stop codon, in Flexi system.
AF086395 - Homo sapiens full length insert cDNA clone ZD75C01.
AK092799 - Homo sapiens cDNA FLJ35480 fis, clone SMINT2007932.
BC007609 - Homo sapiens E2F transcription factor 2, mRNA (cDNA clone IMAGE:3351479), complete cds.
KJ901398 - Synthetic construct Homo sapiens clone ccsbBroadEn_10792 E2F2 gene, encodes complete protein.
DQ575244 - Homo sapiens piRNA piR-43356, complete sequence.
JD323615 - Sequence 304639 from Patent EP1572962.
JD393159 - Sequence 374183 from Patent EP1572962.
JD438115 - Sequence 419139 from Patent EP1572962.
JD392001 - Sequence 373025 from Patent EP1572962.
JD057282 - Sequence 38306 from Patent EP1572962.
JD372770 - Sequence 353794 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q14209 (Reactome details) participates in the following event(s):

R-HSA-3209096 E2F1, E2F2, or E2F3 and SP1 bind p14-ARF promoter
R-HSA-3240765 E2F1/2/3:DP1/2 binds EED gene promoter
R-HSA-3240766 E2F1/2/3:DP1/2 binds SUZ12 gene promoter
R-HSA-3240777 E2F1/2/3:DP1/2 binds EZH2 gene promoter
R-HSA-9018017 RB1 binds and inhibits E2F1/2/3:DP1/2 complexes
R-HSA-2559585 Oncogene Induced Senescence
R-HSA-2559580 Oxidative Stress Induced Senescence
R-HSA-69231 Cyclin D associated events in G1
R-HSA-2559583 Cellular Senescence
R-HSA-69236 G1 Phase
R-HSA-2262752 Cellular responses to stress
R-HSA-453279 Mitotic G1-G1/S phases
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: B2R9W1, E2F2_HUMAN, ENST00000361729.1, ENST00000361729.2, NM_004091, Q14209, Q7Z6H1, uc318chi.1, uc318chi.2
UCSC ID: ENST00000361729.3_7
RefSeq Accession: NM_004091.4
Protein: Q14209 (aka E2F2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.