Human Gene HTR2A (ENST00000542664.4_7) from GENCODE V47lift37
  Description: 5-hydroxytryptamine receptor 2A, transcript variant 3 (from RefSeq NM_001378924.1)
Gencode Transcript: ENST00000542664.4_7
Gencode Gene: ENSG00000102468.11_10
Transcript (Including UTRs)
   Position: hg19 chr13:47,405,681-47,471,188 Size: 65,508 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr13:47,408,972-47,470,041 Size: 61,070 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:47,405,681-47,471,188)mRNA (may differ from genome)Protein (471 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: 5HT2A_HUMAN
DESCRIPTION: RecName: Full=5-hydroxytryptamine receptor 2A; Short=5-HT-2; Short=5-HT-2A; AltName: Full=Serotonin receptor 2A;
FUNCTION: This is one of the several different receptors for 5- hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system. This receptor is involved in tracheal smooth muscle contraction, bronchoconstriction, and control of aldosterone production.
SUBUNIT: Interacts with MPDZ and INADL. May interact with MPP3, PRDX6, DLG4, DLG1, CASK, APBA1 and MAGI2.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein (By similarity). Note=Localizes to the postsynaptic thickening of axo-dendritic synapses (By similarity).
DOMAIN: The PDZ domain-binding motif is involved in the interaction with INADL, CASK, APBA1, DLG1 and DLG4.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.
WEB RESOURCE: Name=SHMPD; Note=The Singapore human mutation and polymorphism database; URL="http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=HTR2A";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: HTR2A
Diseases sorted by gene-association score: schizophrenia* (607), major depressive disorder and accelerated response to antidepressant drug treatment* (572), anorexia nervosa 1* (550), obsessive-compulsive disorder* (421), alcohol dependence* (285), htr2a-related altered drug metabolism* (100), intermittent claudication (32), dysthymic disorder (27), progressive multifocal leukoencephalopathy (20), akinetopsia (18), heart valve disease (17), mood disorder (17), schizoaffective disorder (16), bipolar i disorder (14), generalized anxiety disorder (14), paranoid schizophrenia (14), anxiety disorder (13), borderline personality disorder (12), obstructive sleep apnea (12), leber congenital amaurosis 15 (11), drug-induced mental disorder (11), drug psychosis (11), pulmonary venoocclusive disease (11), serotonin syndrome (11), alzheimer's disease 5 (10), alcoholic psychosis (10), hypoactive sexual desire disorder (10), panic disorder (9), psychotic disorder (9), schizoid personality disorder (9), sudden infant death syndrome (8), post-traumatic stress disorder (8), anorexia nervosa (8), bulimia nervosa (8), tardive dyskinesia (8), migraine with or without aura 1 (8), pathological gambling (7), sleep apnea (7), coronary artery vasospasm (7), personality disorder (7), early-onset schizophrenia (7), autistic disorder (7), psychosexual disorder (6), disease of mental health (6), substance-induced psychosis (6), endogenous depression (6), mental depression (6), periodic limb movement disorder (6), bipolar disorder (6), bruxism (5), phencyclidine abuse (5), megacolon (5), tic disorder (4), attention deficit-hyperactivity disorder (4), cranio-facial dystonia (4), meige syndrome (4), autism spectrum disorder (2), narcolepsy (1), parkinson disease, late-onset (1), nicotine dependence, protection against (1), central nervous system disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.32 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 33.59 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -193.50708-0.273 Picture PostScript Text
3' UTR -759.103291-0.231 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000455 - 5HT2A_rcpt
IPR002231 - 5HT_rcpt
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)
PF10320 - Serpentine type 7TM GPCR chemoreceptor Srsx

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on P28223
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001618 virus receptor activity
GO:0001965 G-protein alpha-subunit binding
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0004993 G-protein coupled serotonin receptor activity
GO:0005515 protein binding
GO:0008144 drug binding
GO:0030594 neurotransmitter receptor activity
GO:0044877 macromolecular complex binding
GO:0051378 serotonin binding
GO:0071886 1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding

Biological Process:
GO:0001659 temperature homeostasis
GO:0006874 cellular calcium ion homeostasis
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007200 phospholipase C-activating G-protein coupled receptor signaling pathway
GO:0007202 activation of phospholipase C activity
GO:0007204 positive regulation of cytosolic calcium ion concentration
GO:0007208 phospholipase C-activating serotonin receptor signaling pathway
GO:0007210 serotonin receptor signaling pathway
GO:0007268 chemical synaptic transmission
GO:0007568 aging
GO:0007610 behavior
GO:0007613 memory
GO:0008219 cell death
GO:0008284 positive regulation of cell proliferation
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process
GO:0014059 regulation of dopamine secretion
GO:0014065 phosphatidylinositol 3-kinase signaling
GO:0014824 artery smooth muscle contraction
GO:0014832 urinary bladder smooth muscle contraction
GO:0016032 viral process
GO:0019233 sensory perception of pain
GO:0030431 sleep
GO:0033674 positive regulation of kinase activity
GO:0042493 response to drug
GO:0043267 negative regulation of potassium ion transport
GO:0043406 positive regulation of MAP kinase activity
GO:0044380 protein localization to cytoskeleton
GO:0045600 positive regulation of fat cell differentiation
GO:0045821 positive regulation of glycolytic process
GO:0045907 positive regulation of vasoconstriction
GO:0046718 viral entry into host cell
GO:0048148 behavioral response to cocaine
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation
GO:0050965 detection of temperature stimulus involved in sensory perception of pain
GO:0050966 detection of mechanical stimulus involved in sensory perception of pain
GO:0051209 release of sequestered calcium ion into cytosol
GO:0051967 negative regulation of synaptic transmission, glutamatergic
GO:0070374 positive regulation of ERK1 and ERK2 cascade

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0005901 caveola
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030424 axon
GO:0030425 dendrite
GO:0031410 cytoplasmic vesicle
GO:0042995 cell projection
GO:0043025 neuronal cell body
GO:0043198 dendritic shaft
GO:0070852 cell body fiber


-  Descriptions from all associated GenBank mRNAs
  X57830 - H.sapiens serotonin 5-HT2 receptor mRNA.
BX647777 - Homo sapiens mRNA; cDNA DKFZp686O2359 (from clone DKFZp686O2359).
BC069356 - Homo sapiens 5-hydroxytryptamine (serotonin) receptor 2A, mRNA (cDNA clone MGC:97121 IMAGE:7262350), complete cds.
BC069576 - Homo sapiens 5-hydroxytryptamine (serotonin) receptor 2A, mRNA (cDNA clone MGC:97129 IMAGE:7262362), complete cds.
AK302787 - Homo sapiens cDNA FLJ50307 complete cds, highly similar to 5-hydroxytryptamine 2A receptor.
S71229 - serotonin2A receptor [human, platelets, mRNA, 1526 nt].
BC074848 - Homo sapiens 5-hydroxytryptamine (serotonin) receptor 2A, mRNA (cDNA clone MGC:104101 IMAGE:30915554), complete cds.
BC074849 - Homo sapiens 5-hydroxytryptamine (serotonin) receptor 2A, mRNA (cDNA clone MGC:103939 IMAGE:30915332), complete cds.
A23337 - H.sapiens mRNA for 5-HT2 receptor.
AF498982 - Homo sapiens 5-hydroxytryptamine receptor 2A (HTR2A) mRNA, complete cds.
BC096839 - Homo sapiens 5-hydroxytryptamine (serotonin) receptor 2A, mRNA (cDNA clone MGC:111738 IMAGE:6519217), complete cds.
AK314132 - Homo sapiens cDNA, FLJ94830, Homo sapiens 5-hydroxytryptamine (serotonin) receptor 2A (HTR2A),mRNA.
AB590815 - Synthetic construct DNA, clone: pFN21AB5802, Homo sapiens HTR2A gene for 5-hydroxytryptamine (serotonin) receptor 2A, without stop codon, in Flexi system.
M86841 - Human serotonin receptor type 2 (5HT2) mRNA, complete cds.
CU686767 - Synthetic construct Homo sapiens gateway clone IMAGE:100022685 5' read HTR2A mRNA.
JD254136 - Sequence 235160 from Patent EP1572962.
JD555564 - Sequence 536588 from Patent EP1572962.
JD050868 - Sequence 31892 from Patent EP1572962.
JD097461 - Sequence 78485 from Patent EP1572962.
JD287150 - Sequence 268174 from Patent EP1572962.
JD499779 - Sequence 480803 from Patent EP1572962.
JD348052 - Sequence 329076 from Patent EP1572962.
JD312626 - Sequence 293650 from Patent EP1572962.
JD362815 - Sequence 343839 from Patent EP1572962.
JD456773 - Sequence 437797 from Patent EP1572962.
JD442829 - Sequence 423853 from Patent EP1572962.
JD532199 - Sequence 513223 from Patent EP1572962.
JD558701 - Sequence 539725 from Patent EP1572962.
JD326901 - Sequence 307925 from Patent EP1572962.
JD386831 - Sequence 367855 from Patent EP1572962.
JD335192 - Sequence 316216 from Patent EP1572962.
JD266098 - Sequence 247122 from Patent EP1572962.
JD180193 - Sequence 161217 from Patent EP1572962.
JD318418 - Sequence 299442 from Patent EP1572962.
JD545811 - Sequence 526835 from Patent EP1572962.
JD061257 - Sequence 42281 from Patent EP1572962.
JD096883 - Sequence 77907 from Patent EP1572962.
JD050167 - Sequence 31191 from Patent EP1572962.
JD219168 - Sequence 200192 from Patent EP1572962.
JD380266 - Sequence 361290 from Patent EP1572962.
JD533181 - Sequence 514205 from Patent EP1572962.
JD471555 - Sequence 452579 from Patent EP1572962.
JD449914 - Sequence 430938 from Patent EP1572962.
JD465039 - Sequence 446063 from Patent EP1572962.
JD479092 - Sequence 460116 from Patent EP1572962.
JD100697 - Sequence 81721 from Patent EP1572962.
JD074581 - Sequence 55605 from Patent EP1572962.
JD041100 - Sequence 22124 from Patent EP1572962.
JD221293 - Sequence 202317 from Patent EP1572962.
JD515607 - Sequence 496631 from Patent EP1572962.
JD146877 - Sequence 127901 from Patent EP1572962.
JD531117 - Sequence 512141 from Patent EP1572962.
JD465689 - Sequence 446713 from Patent EP1572962.
JD324061 - Sequence 305085 from Patent EP1572962.
JD292048 - Sequence 273072 from Patent EP1572962.
JD200618 - Sequence 181642 from Patent EP1572962.
JD434183 - Sequence 415207 from Patent EP1572962.
JD316217 - Sequence 297241 from Patent EP1572962.
JD227373 - Sequence 208397 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P28223 (Reactome details) participates in the following event(s):

R-HSA-390930 5-HT2 receptor can bind serotonin
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-390666 Serotonin receptors
R-HSA-416476 G alpha (q) signalling events
R-HSA-375280 Amine ligand-binding receptors
R-HSA-388396 GPCR downstream signalling
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-372790 Signaling by GPCR
R-HSA-500792 GPCR ligand binding
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: 5HT2A_HUMAN, B2RAC5, B4DZ79, ENST00000542664.1, ENST00000542664.2, ENST00000542664.3, F5GWE8, HTR2, NM_001378924, P28223, Q5T8C0, uc324uav.1, uc324uav.2
UCSC ID: ENST00000542664.4_7
RefSeq Accession: NM_000621.5
Protein: P28223 (aka 5HT2A_HUMAN or 5H2A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.