Human Gene NR5A1 (ENST00000373588.9_7) from GENCODE V47lift37
  Description: nuclear receptor subfamily 5 group A member 1 (from RefSeq NM_004959.5)
Gencode Transcript: ENST00000373588.9_7
Gencode Gene: ENSG00000136931.10_11
Transcript (Including UTRs)
   Position: hg19 chr9:127,243,515-127,269,678 Size: 26,164 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr9:127,245,037-127,265,674 Size: 20,638 Coding Exon Count: 6 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:127,243,515-127,269,678)mRNA (may differ from genome)Protein (461 aa)
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-  Comments and Description Text from UniProtKB
  ID: STF1_HUMAN
DESCRIPTION: RecName: Full=Steroidogenic factor 1; Short=SF-1; Short=STF-1; AltName: Full=Adrenal 4-binding protein; AltName: Full=Fushi tarazu factor homolog 1; AltName: Full=Nuclear receptor subfamily 5 group A member 1; AltName: Full=Steroid hormone receptor Ad4BP;
FUNCTION: Transcriptional activator. Seems to be essential for sexual differentiation and formation of the primary steroidogenic tissues. Binds to the Ad4 site found in the promoter region of steroidogenic P450 genes such as CYP11A, CYP11B and CYP21B. Also regulates the AMH/Muellerian inhibiting substance gene as well as the AHCH and STAR genes. 5'-YCAAGGYC-3' and 5'-RRAGGTCA-3' are the consensus sequences for the recognition by NR5A1. The SFPQ-NONO- NR5A1 complex binds to the CYP17 promoter and regulates basal and cAMP-dependent transcriptional avtivity. Binds phosphatidylcholine (By similarity). Binds phospholipids with a phosphatidylinositol (PI) headgroup, in particular PI(3,4)P2 and PI(3,4,5)P3. Activated by the phosphorylation of NR5A1 by HIPK3 leading to increased steroidogenic gene expression upon cAMP signaling pathway stimulation.
SUBUNIT: Binds DNA as a monomer. Interacts with NR0B2 and PPARGC1A (By similarity). Part of a complex consisting of SFPQ, NONO and NR5A1. Interacts with NCOA2. Interacts with DGKQ and CDK7. Binds to and activated by HIPK3.
SUBCELLULAR LOCATION: Nucleus.
PTM: Acetylation stimulates the transcriptional activity.
PTM: Sumoylation reduces CDK7-mediated phosophorylation on Ser- 203.
PTM: Phosphorylated on Ser-203 by CDK7. This phosphorylation promotes transcriptional activity.
DISEASE: Defects in NR5A1 are a cause of 46,XY sex reversal type 3 (SRXY3) [MIM:612965]. A condition characterized by male-to-female sex reversal in the presence of a normal 46,XY karyotype.
DISEASE: Defects in NR5A1 are a cause of adrenocortical insufficiency without ovarian defect (ACIWOD) [MIM:184757]. ACIWOD is characterized by severe 'slackness' muscular hypotonia. There is decreased sodium, increased potassium and elevated ACTH.
DISEASE: Defects in NR5A1 are the cause of premature ovarian failure type 7 (POF7) [MIM:612964]. An ovarian disorder defined as the cessation of ovarian function under the age of 40 years. It is characterized by oligomenorrhea or amenorrhea, in the presence of elevated levels of serum gonadotropins and low estradiol.
DISEASE: Defects in NR5A1 are the cause of spermatogenic failure type 8 (SPGF8) [MIM:613957]. SPGF8 is an infertility disorder characterized by spermatogenesis failure and severe oligozoospermia.
SIMILARITY: Belongs to the nuclear hormone receptor family. NR5 subfamily.
SIMILARITY: Contains 1 nuclear receptor DNA-binding domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NR5A1
Diseases sorted by gene-association score: premature ovarian failure 7* (1330), spermatogenic failure 8* (1330), 46, xx sex reversal 4* (1219), 46xy sex reversal 3* (1200), 46 xy gonadal dysgenesis* (183), 46,xy partial gonadal dysgenesis* (157), 46xx sex reversal 1* (143), nr5a1-related 46,xy dsd and 46,xy cgd* (100), sex cord-gonadal stromal tumor (30), infertility (23), 46 xx gonadal dysgenesis (18), phacolytic glaucoma (15), amenorrhea (14), adrenal hypoplasia, congenital (14), adrenal cortical adenoma (13), gonadal dysgenesis (12), gonadal disease (12), adrenal cortical carcinoma (11), image syndrome (10), lipoid adrenal hyperplasia (10), adrenal rest tumor (10), endometriosis (9), cryptorchidism (9), androgen insensitivity (9), anorchia (9), denys-drash syndrome (9), hypospadias (9), lipid pneumonia (8), sertoli cell tumor (8), leydig cell tumor (7), adrenal cortical hypofunction (7), optic papillitis (6), ancylostomiasis (6), wilms tumor susceptibility-5 (6), blepharophimosis, epicanthus inversus, and ptosis, type 1 (6), persistent mullerian duct syndrome (6), cloacal exstrophy (6), adrenal carcinoma (5), frasier syndrome (5), alternating hemiplegia of childhood (5), ovarian disease (3), kallmann syndrome (2), premature ovarian failure 1 (1), female reproductive system disease (1), reproductive system disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 106.62 RPKM in Spleen
Total median expression: 271.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -71.30166-0.430 Picture PostScript Text
3' UTR -663.101522-0.436 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008946 - Nucl_hormone_rcpt_ligand-bd
IPR000536 - Nucl_hrmn_rcpt_lig-bd_core
IPR016355 - Steroidogenic_factor_1
IPR001723 - Str_hrmn_rcpt
IPR001628 - Znf_hrmn_rcpt
IPR013088 - Znf_NHR/GATA

Pfam Domains:
PF00104 - Ligand-binding domain of nuclear hormone receptor
PF00105 - Zinc finger, C4 type (two domains)

SCOP Domains:
48508 - Nuclear receptor ligand-binding domain
57716 - Glucocorticoid receptor-like (DNA-binding domain)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1YOW - X-ray MuPIT 1ZDT - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q13285
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677 DNA binding
GO:0003682 chromatin binding
GO:0003690 double-stranded DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
GO:0003707 steroid hormone receptor activity
GO:0003713 transcription coactivator activity
GO:0004879 RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
GO:0005515 protein binding
GO:0005543 phospholipid binding
GO:0008270 zinc ion binding
GO:0008289 lipid binding
GO:0019899 enzyme binding
GO:0043565 sequence-specific DNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0001553 luteinization
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006366 transcription from RNA polymerase II promoter
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0007267 cell-cell signaling
GO:0007530 sex determination
GO:0007538 primary sex determination
GO:0008584 male gonad development
GO:0008585 female gonad development
GO:0009755 hormone-mediated signaling pathway
GO:0009888 tissue development
GO:0010259 multicellular organism aging
GO:0010628 positive regulation of gene expression
GO:0022414 reproductive process
GO:0030154 cell differentiation
GO:0030325 adrenal gland development
GO:0030522 intracellular receptor signaling pathway
GO:0042445 hormone metabolic process
GO:0043401 steroid hormone mediated signaling pathway
GO:0045893 positive regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0050810 regulation of steroid biosynthetic process
GO:0051457 maintenance of protein location in nucleus
GO:0097210 response to gonadotropin-releasing hormone
GO:0097720 calcineurin-mediated signaling
GO:2000020 positive regulation of male gonad development
GO:2000195 negative regulation of female gonad development

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0090575 RNA polymerase II transcription factor complex


-  Descriptions from all associated GenBank mRNAs
  AK090858 - Homo sapiens cDNA FLJ33539 fis, clone BRAMY2007610.
AX746651 - Sequence 176 from Patent EP1308459.
BC032501 - Homo sapiens nuclear receptor subfamily 5, group A, member 1, mRNA (cDNA clone MGC:45252 IMAGE:5227690), complete cds.
JD329319 - Sequence 310343 from Patent EP1572962.
JD405753 - Sequence 386777 from Patent EP1572962.
JD441947 - Sequence 422971 from Patent EP1572962.
JD166752 - Sequence 147776 from Patent EP1572962.
JD220254 - Sequence 201278 from Patent EP1572962.
JD256124 - Sequence 237148 from Patent EP1572962.
JD293623 - Sequence 274647 from Patent EP1572962.
JD462136 - Sequence 443160 from Patent EP1572962.
JD104405 - Sequence 85429 from Patent EP1572962.
JD532323 - Sequence 513347 from Patent EP1572962.
JD165548 - Sequence 146572 from Patent EP1572962.
JD291533 - Sequence 272557 from Patent EP1572962.
JD233441 - Sequence 214465 from Patent EP1572962.
JD090694 - Sequence 71718 from Patent EP1572962.
JD363191 - Sequence 344215 from Patent EP1572962.
JD132643 - Sequence 113667 from Patent EP1572962.
U76388 - Human steroidogenic factor 1 mRNA, complete cds.
JD095552 - Sequence 76576 from Patent EP1572962.
JD510060 - Sequence 491084 from Patent EP1572962.
JD084515 - Sequence 65539 from Patent EP1572962.
JD541180 - Sequence 522204 from Patent EP1572962.
JD519720 - Sequence 500744 from Patent EP1572962.
JD127149 - Sequence 108173 from Patent EP1572962.
JD389473 - Sequence 370497 from Patent EP1572962.
JD191215 - Sequence 172239 from Patent EP1572962.
JD467506 - Sequence 448530 from Patent EP1572962.
JD181114 - Sequence 162138 from Patent EP1572962.
JD475197 - Sequence 456221 from Patent EP1572962.
JD466405 - Sequence 447429 from Patent EP1572962.
JD469354 - Sequence 450378 from Patent EP1572962.
JD565640 - Sequence 546664 from Patent EP1572962.
JD549309 - Sequence 530333 from Patent EP1572962.
JD179805 - Sequence 160829 from Patent EP1572962.
JD298529 - Sequence 279553 from Patent EP1572962.
JD216932 - Sequence 197956 from Patent EP1572962.
AB307718 - Homo sapiens NR5A1 mRNA for steroidogenic factor-1, complete cds.
HQ692856 - Homo sapiens steroidogenic factor 1 nuclear receptor (NR5A1) mRNA, complete cds.
HQ709184 - Homo sapiens steroidogenic factor 1 nuclear receptor (NR5A1) mRNA, complete cds.
JF432187 - Synthetic construct Homo sapiens clone IMAGE:100073346 nuclear receptor subfamily 5, group A, member 1 (NR5A1) gene, encodes complete protein.
KJ891201 - Synthetic construct Homo sapiens clone ccsbBroadEn_00595 NR5A1 gene, encodes complete protein.
KR710870 - Synthetic construct Homo sapiens clone CCSBHm_00017743 NR5A1 (NR5A1) mRNA, encodes complete protein.
EU446475 - Synthetic construct Homo sapiens clone IMAGE:100070293; IMAGE:100011684; FLH262813.01L nuclear receptor subfamily 5, group A, member 1 (NR5A1) gene, encodes complete protein.
AB463946 - Synthetic construct DNA, clone: pF1KB7702, Homo sapiens NR5A1 gene for nuclear receptor subfamily 5, group A, member 1, without stop codon, in Flexi system.
CU689402 - Synthetic construct Homo sapiens gateway clone IMAGE:100019508 5' read NR5A1 mRNA.
JD271345 - Sequence 252369 from Patent EP1572962.
JD077603 - Sequence 58627 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q13285 (Reactome details) participates in the following event(s):

R-HSA-376419 Formation of NR-MED1 Coactivator Complex
R-HSA-383280 Nuclear Receptor transcription pathway
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: AD4BP, ENST00000373588.1, ENST00000373588.2, ENST00000373588.3, ENST00000373588.4, ENST00000373588.5, ENST00000373588.6, ENST00000373588.7, ENST00000373588.8, FTZF1, NM_004959, O15196, Q13285, Q5T6F5, SF1, STF1_HUMAN, uc318kxa.1, uc318kxa.2
UCSC ID: ENST00000373588.9_7
RefSeq Accession: NM_004959.5
Protein: Q13285 (aka STF1_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene NR5A1:
gonad-dys-46xy (Nonsyndromic Disorders of Testicular Development Overview)
xxms (Nonsyndromic 46,XX Testicular Disorders/Differences of Sex Development)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.