Human Gene ORC3 (ENST00000392844.8_9) from GENCODE V47lift37
  Description: origin recognition complex subunit 3, transcript variant 2 (from RefSeq NM_012381.4)
Gencode Transcript: ENST00000392844.8_9
Gencode Gene: ENSG00000135336.17_15
Transcript (Including UTRs)
   Position: hg19 chr6:88,299,853-88,377,169 Size: 77,317 Total Exon Count: 20 Strand: +
Coding Region
   Position: hg19 chr6:88,299,887-88,376,841 Size: 76,955 Coding Exon Count: 20 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:88,299,853-88,377,169)mRNA (may differ from genome)Protein (711 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ORC3_HUMAN
DESCRIPTION: RecName: Full=Origin recognition complex subunit 3; AltName: Full=Origin recognition complex subunit Latheo;
FUNCTION: Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.
SUBUNIT: ORC is composed of six subunits. In human, ORC is cell cycle-dependent regulated: it is sequentially assembled at the exit from anaphase of mitosis and disassembled as cells enter S phase.
INTERACTION: Q13415:ORC1; NbExp=12; IntAct=EBI-374916, EBI-374847; O43929:ORC4; NbExp=12; IntAct=EBI-374916, EBI-374889; O43913:ORC5; NbExp=15; IntAct=EBI-374916, EBI-374928; Q9Y5N6:ORC6; NbExp=4; IntAct=EBI-374916, EBI-374840;
SUBCELLULAR LOCATION: Nucleus.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR (By similarity).
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Belongs to the ORC3 family.
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/orc3l/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.87 RPKM in Testis
Total median expression: 358.90 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -4.9034-0.144 Picture PostScript Text
3' UTR -58.00328-0.177 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR020795 - ORC3

Pfam Domains:
PF07034 - Origin recognition complex (ORC) subunit 3 N-terminus
PF18137 - Origin recognition complex winged helix C-terminal
PF19675 - Origin recognition complex subunit 3 insertion domain

SCOP Domains:
158553 - TAFH domain-like

ModBase Predicted Comparative 3D Structure on Q9UBD5
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003677 DNA binding
GO:0003688 DNA replication origin binding
GO:0005515 protein binding

Biological Process:
GO:0000082 G1/S transition of mitotic cell cycle
GO:0006260 DNA replication
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006270 DNA replication initiation
GO:0061351 neural precursor cell proliferation

Cellular Component:
GO:0000784 nuclear chromosome, telomeric region
GO:0000808 origin recognition complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005656 nuclear pre-replicative complex
GO:0005664 nuclear origin of replication recognition complex
GO:0016604 nuclear body
GO:0031261 DNA replication preinitiation complex


-  Descriptions from all associated GenBank mRNAs
  LF383854 - JP 2014500723-A/191357: Polycomb-Associated Non-Coding RNAs.
AF125507 - Homo sapiens origin recognition complex subunit 3 (ORC3) mRNA, complete cds.
AK316298 - Homo sapiens cDNA, FLJ79197 complete cds, highly similar to Origin recognition complex subunit 3.
AL080116 - Homo sapiens mRNA; cDNA DKFZp564A0723 (from clone DKFZp564A0723).
AK303056 - Homo sapiens cDNA FLJ56522 complete cds, highly similar to Origin recognition complex subunit 3.
AK222795 - Homo sapiens mRNA for origin recognition complex, subunit 3 isoform 2 variant, clone: HEP01374.
AK303195 - Homo sapiens cDNA FLJ50322 complete cds, highly similar to Origin recognition complex subunit 3.
AF093535 - Homo sapiens origin recognition complex subunit LATHEO (LATHEO) mRNA, complete cds.
AK302750 - Homo sapiens cDNA FLJ59790 complete cds, highly similar to Origin recognition complex subunit 3.
BC047689 - Homo sapiens, similar to Origin recognition complex subunit 3, clone IMAGE:6044604, mRNA, partial cds.
BC035494 - Homo sapiens origin recognition complex, subunit 3-like (yeast), mRNA (cDNA clone MGC:12629 IMAGE:4298339), complete cds.
AK315911 - Homo sapiens cDNA, FLJ78810 complete cds, highly similar to Origin recognition complex subunit 3.
AK303182 - Homo sapiens cDNA FLJ54334 complete cds, highly similar to Origin recognition complex subunit 3.
EU446990 - Synthetic construct Homo sapiens clone IMAGE:100070041; IMAGE:100012199; FLH258312.01L origin recognition complex, subunit 3-like (yeast) (ORC3L) gene, encodes complete protein.
EU831634 - Synthetic construct Homo sapiens clone HAIB:100066663; DKFZo007E0819 origin recognition complex, subunit 3-like (yeast) protein (ORC3L) gene, encodes complete protein.
AB527813 - Synthetic construct DNA, clone: pF1KB9986, Homo sapiens ORC3L gene for origin recognition complex, subunit 3-like, without stop codon, in Flexi system.
AF135044 - Homo sapiens origin recognition complex ORC3L subunit (ORC3L) mRNA, complete cds.
U50950 - Human infant brain unknown product mRNA, complete cds.
CR456814 - Homo sapiens full open reading frame cDNA clone RZPDo834F0218D for gene ORC3L, origin recognition complex, subunit 3-like (yeast); complete cds, incl. stopcodon.
MA619431 - JP 2018138019-A/191357: Polycomb-Associated Non-Coding RNAs.
LF354160 - JP 2014500723-A/161663: Polycomb-Associated Non-Coding RNAs.
MA589737 - JP 2018138019-A/161663: Polycomb-Associated Non-Coding RNAs.
LF354154 - JP 2014500723-A/161657: Polycomb-Associated Non-Coding RNAs.
LF206411 - JP 2014500723-A/13914: Polycomb-Associated Non-Coding RNAs.
AK094135 - Homo sapiens cDNA FLJ36816 fis, clone ASTRO2003925.
LF354143 - JP 2014500723-A/161646: Polycomb-Associated Non-Coding RNAs.
LF206409 - JP 2014500723-A/13912: Polycomb-Associated Non-Coding RNAs.
LF354141 - JP 2014500723-A/161644: Polycomb-Associated Non-Coding RNAs.
LF354138 - JP 2014500723-A/161641: Polycomb-Associated Non-Coding RNAs.
JD301222 - Sequence 282246 from Patent EP1572962.
JD502032 - Sequence 483056 from Patent EP1572962.
LF354137 - JP 2014500723-A/161640: Polycomb-Associated Non-Coding RNAs.
MA589731 - JP 2018138019-A/161657: Polycomb-Associated Non-Coding RNAs.
MA441988 - JP 2018138019-A/13914: Polycomb-Associated Non-Coding RNAs.
MA589720 - JP 2018138019-A/161646: Polycomb-Associated Non-Coding RNAs.
MA441986 - JP 2018138019-A/13912: Polycomb-Associated Non-Coding RNAs.
MA589718 - JP 2018138019-A/161644: Polycomb-Associated Non-Coding RNAs.
MA589715 - JP 2018138019-A/161641: Polycomb-Associated Non-Coding RNAs.
MA589714 - JP 2018138019-A/161640: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_mcmPathway - CDK Regulation of DNA Replication

Reactome (by CSHL, EBI, and GO)

Protein Q9UBD5 (Reactome details) participates in the following event(s):

R-HSA-68595 Orc3 associates with Orc2 constitutively bound at origins of replication
R-HSA-68603 Orc5 associates with Orc3:Orc2:origin complexes
R-HSA-68688 CDC6 association with ORC:origin complexes mediated by MCM8
R-HSA-113638 Association of Cyclin B/Cdk1 with replicative origin inhibits pre-RC formation
R-HSA-176973 Association of MCM8 with ORC:origin complex
R-HSA-68944 Orc1 is phosphorylated by cyclin A/CDK2
R-HSA-68615 Orc6 associates with Orc1:Orc4:Orc5:Orc3:Orc2:origin complexes, forming ORC:origin complexes
R-HSA-68610 Orc4 associates with Orc5:Orc3:Orc2:origin complexes
R-HSA-68826 Free CDT1 associates with CDC6:ORC:origin complexes
R-HSA-68611 Orc1 associates with Orc4:Orc5:Orc3:Orc2:origin complexes
R-HSA-68849 Mcm2-7 associates with the Cdt1:CDC6:ORC:origin complex, forming the pre-replicative complex (preRC)
R-HSA-68919 Mcm10 associates with the pre-replicative complex, stabilizing Mcm2-7
R-HSA-68918 CDK and DDK associate with the Mcm10:pre-replicative complex
R-HSA-68940 Cdt1 is displaced from the pre-replicative complex.
R-HSA-68917 Cdc45 associates with the pre-replicative complex at the origin
R-HSA-68916 DNA Replication Factor A (RPA) associates with the pre-replicative complex at the origin
R-HSA-176318 Loading of claspin onto DNA during replication origin firing
R-HSA-176298 Activation of claspin
R-HSA-68616 Assembly of the ORC complex at the origin of replication
R-HSA-68689 CDC6 association with the ORC:origin complex
R-HSA-113507 E2F-enabled inhibition of pre-replication complex formation
R-HSA-68867 Assembly of the pre-replicative complex
R-HSA-68949 Orc1 removal from chromatin
R-HSA-68827 CDT1 association with the CDC6:ORC:origin complex
R-HSA-113510 E2F mediated regulation of DNA replication
R-HSA-69002 DNA Replication Pre-Initiation
R-HSA-69052 Switching of origins to a post-replicative state
R-HSA-69206 G1/S Transition
R-HSA-68874 M/G1 Transition
R-HSA-69239 Synthesis of DNA
R-HSA-68962 Activation of the pre-replicative complex
R-HSA-453279 Mitotic G1-G1/S phases
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-69306 DNA Replication
R-HSA-69242 S Phase
R-HSA-1640170 Cell Cycle
R-HSA-176187 Activation of ATR in response to replication stress
R-HSA-69481 G2/M Checkpoints
R-HSA-69620 Cell Cycle Checkpoints

-  Other Names for This Gene
  Alternate Gene Symbols: A2A2T5, B4E025, ENST00000392844.1, ENST00000392844.2, ENST00000392844.3, ENST00000392844.4, ENST00000392844.5, ENST00000392844.6, ENST00000392844.7, LATHEO, NM_012381, ORC3L, ORC3_HUMAN, Q13565, Q53GY6, Q5T159, Q6IUY7, Q86TN5, Q9UBD5, Q9UG44, Q9UNT6, uc318vkk.1, uc318vkk.2
UCSC ID: ENST00000392844.8_9
RefSeq Accession: NM_012381.4
Protein: Q9UBD5 (aka ORC3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.