Human Gene PRKCG (ENST00000263431.4_4) from GENCODE V47lift37
  Description: protein kinase C gamma, transcript variant 2 (from RefSeq NM_002739.5)
Gencode Transcript: ENST00000263431.4_4
Gencode Gene: ENSG00000126583.12_12
Transcript (Including UTRs)
   Position: hg19 chr19:54,385,451-54,410,906 Size: 25,456 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr19:54,385,749-54,410,149 Size: 24,401 Coding Exon Count: 18 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:54,385,451-54,410,906)mRNA (may differ from genome)Protein (697 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KPCG_HUMAN
DESCRIPTION: RecName: Full=Protein kinase C gamma type; Short=PKC-gamma; EC=2.7.11.13;
FUNCTION: Calcium-activated, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase that plays diverse roles in neuronal cells and eye tissues, such as regulation of the neuronal receptors GRIA4/GLUR4 and GRIN1/NMDAR1, modulation of receptors and neuronal functions related to sensitivity to opiates, pain and alcohol, mediation of synaptic function and cell survival after ischemia, and inhibition of gap junction activity after oxidative stress. Binds and phosphorylates GRIA4/GLUR4 glutamate receptor and regulates its function by increasing plasma membrane-associated GRIA4 expression. In primary cerebellar neurons treated with the agonist 3,5-dihyidroxyphenylglycine, functions downstream of the metabotropic glutamate receptor GRM5/MGLUR5 and phosphorylates GRIN1/NMDAR1 receptor which plays a key role in synaptic plasticity, synaptogenesis, excitotoxicity, memory acquisition and learning. May be involved in the regulation of hippocampal long-term potentiation (LTP), but may be not necessary for the process of synaptic plasticity. May be involved in desensitization of mu-type opioid receptor-mediated G-protein activation in the spinal cord, and may be critical for the development and/or maintenance of morphine-induced reinforcing effects in the limbic forebrain. May modulate the functionality of mu-type-opioid receptors by participating in a signaling pathway which leads to the phosphorylation and degradation of opioid receptors. May also contributes to chronic morphine-induced changes in nociceptive processing. Plays a role in neuropathic pain mechanisms and contributes to the maintenance of the allodynia pain produced by peripheral inflammation. Plays an important role in initial sensitivity and tolerance to ethanol, by mediating the behavioral effects of ethanol as well as the effects of this drug on the GABA(A) receptors. During and after cerebral ischemia modulate neurotransmission and cell survival in synaptic membranes, and is involved in insulin-induced inhibition of necrosis, an important mechanism for minimizing ischemic injury. Required for the elimination of multiple climbing fibers during innervation of Purkinje cells in developing cerebellum. Is activated in lens epithelial cells upon hydrogen peroxide treatment, and phosphorylates connexin-43 (GJA1/CX43), resulting in disassembly of GJA1 gap junction plaques and inhibition of gap junction activity which could provide a protective effect against oxidative stress (By similarity). Phosphorylates p53/TP53 and promotes p53/TP53-dependent apoptosis in response to DNA damage.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Binds 3 calcium ions per subunit. The ions are bound to the C2 domain.
ENZYME REGULATION: Classical (or conventional) PKCs (PRKCA, PRKCB and PRKCG) are activated by calcium and diacylglycerol (DAG) in the presence of phosphatidylserine. Three specific sites; Thr-514 (activation loop of the kinase domain), Thr-655 (turn motif) and Thr-674 (hydrophobic region), need to be phosphorylated for its full activation.
SUBUNIT: Interacts with GRIA4 (By similarity). Interacts with CDCP1. Interacts with TP53INP1 and p53/TP53.
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Cytoplasm, perinuclear region (By similarity). Cell membrane; Peripheral membrane protein (By similarity). Cell junction, synapse, synaptosome (By similarity). Cell projection, dendrite (By similarity). Note=Translocates to synaptic membranes on stimulation (By similarity).
TISSUE SPECIFICITY: Expressed in Purkinje cells of the cerebellar cortex.
PTM: Autophosphorylation on Thr-674 appears to regulate motor functions of junctophilins, JPH3 and JPH4 (By similarity).
DISEASE: Defects in PRKCG are the cause of spinocerebellar ataxia type 14 (SCA14) [MIM:605361]. Spinocerebellar ataxia is a clinically and genetically heterogeneous group of cerebellar disorders. Patients show progressive incoordination of gait and often poor coordination of hands, speech and eye movements, due to degeneration of the cerebellum with variable involvement of the brainstem and spinal cord. SCA14 is an autosomal dominant cerebellar ataxia (ADCA).
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 1 C2 domain.
SIMILARITY: Contains 2 phorbol-ester/DAG-type zinc fingers.
SIMILARITY: Contains 1 protein kinase domain.
WEB RESOURCE: Name=Mutations of the PRKCG gene; Note=Retina International's Scientific Newsletter; URL="http://www.retina-international.org/files/sci-news/prkcgmut.htm";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/PRKCG";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PRKCG
Diseases sorted by gene-association score: spinocerebellar ataxia 14* (1623), spinocerebellar ataxia type14* (100), autosomal dominant cerebellar ataxia (27), cerebellar ataxia (7), acute contagious conjunctivitis (7), ataxia (7), spinocerebellar ataxia 28 (6), cerebellar disease (5), spinocerebellar ataxia 11 (5), retinitis pigmentosa (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 51.74 RPKM in Brain - Nucleus accumbens (basal ganglia)
Total median expression: 299.58 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -120.00298-0.403 Picture PostScript Text
3' UTR -238.10757-0.315 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR000008 - C2_Ca-dep
IPR008973 - C2_Ca/lipid-bd_dom_CaLB
IPR020477 - C2_dom
IPR018029 - C2_membr_targeting
IPR020454 - DAG/PE-bd
IPR011009 - Kinase-like_dom
IPR017892 - Pkinase_C
IPR002219 - Prot_Kinase_C-like_PE/DAG-bd
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR014375 - Protein_kinase_C_a/b/g
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF00130 - Phorbol esters/diacylglycerol binding domain (C1 domain)
PF00168 - C2 domain
PF00433 - Protein kinase C terminal domain
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
56112 - Protein kinase-like (PK-like)
57889 - Cysteine-rich domain
57903 - FYVE/PHD zinc finger

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2E73 - NMR MuPIT 2UZP - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P05129
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004697 protein kinase C activity
GO:0004698 calcium-dependent protein kinase C activity
GO:0004712 protein serine/threonine/tyrosine kinase activity
GO:0005524 ATP binding
GO:0008270 zinc ion binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006468 protein phosphorylation
GO:0007268 chemical synaptic transmission
GO:0007611 learning or memory
GO:0007635 chemosensory behavior
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0030168 platelet activation
GO:0031397 negative regulation of protein ubiquitination
GO:0032095 regulation of response to food
GO:0032425 positive regulation of mismatch repair
GO:0035556 intracellular signal transduction
GO:0042177 negative regulation of protein catabolic process
GO:0042752 regulation of circadian rhythm
GO:0043278 response to morphine
GO:0043524 negative regulation of neuron apoptotic process
GO:0046777 protein autophosphorylation
GO:0048265 response to pain
GO:0048511 rhythmic process
GO:0050764 regulation of phagocytosis
GO:0060384 innervation
GO:1901799 negative regulation of proteasomal protein catabolic process
GO:1990911 response to psychosocial stress

Cellular Component:
GO:0005622 intracellular
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005911 cell-cell junction
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0030054 cell junction
GO:0030425 dendrite
GO:0042995 cell projection
GO:0043005 neuron projection
GO:0045202 synapse
GO:0048471 perinuclear region of cytoplasm
GO:0097060 synaptic membrane


-  Descriptions from all associated GenBank mRNAs
  AK296412 - Homo sapiens cDNA FLJ54490 complete cds, highly similar to Protein kinase C gamma type (EC 2.7.11.13).
AK302958 - Homo sapiens cDNA FLJ52648 complete cds, highly similar to Protein kinase C gamma type (EC 2.7.11.13).
AK296434 - Homo sapiens cDNA FLJ60619 complete cds, highly similar to Protein kinase C gamma type (EC 2.7.11.13).
AK312302 - Homo sapiens cDNA, FLJ92607, highly similar to Homo sapiens protein kinase C, gamma (PRKCG), mRNA.
M13977 - Human (clone lambda-hPKC-gamma6) protein kinase C-gamma (PRKCG) mRNA, 5' end cds.
AF345987 - Homo sapiens protein kinase C gamma (PKCG) mRNA, complete cds.
AX589157 - Sequence 5 from Patent WO02083727.
BC047876 - Homo sapiens protein kinase C, gamma, mRNA (cDNA clone MGC:57564 IMAGE:5764695), complete cds.
AB209671 - Homo sapiens mRNA for protein kinase C, gamma variant protein.
AB527732 - Synthetic construct DNA, clone: pF1KB6274, Homo sapiens PRKCG gene for protein kinase C, gamma, without stop codon, in Flexi system.
CU690520 - Synthetic construct Homo sapiens gateway clone IMAGE:100021455 5' read PRKCG mRNA.
KJ905288 - Synthetic construct Homo sapiens clone ccsbBroadEn_14791 PRKCG gene, encodes complete protein.
AK303741 - Homo sapiens cDNA FLJ50347 complete cds, highly similar to Protein kinase C gamma type (EC 2.7.11.13).
Z15114 - H.sapiens mRNA for protein kinase C gamma (partial).
AX589158 - Sequence 6 from Patent WO02083727.
JD139242 - Sequence 120266 from Patent EP1572962.
JD116386 - Sequence 97410 from Patent EP1572962.
JD123047 - Sequence 104071 from Patent EP1572962.
JD457730 - Sequence 438754 from Patent EP1572962.
JD123623 - Sequence 104647 from Patent EP1572962.
JD247150 - Sequence 228174 from Patent EP1572962.
JD415850 - Sequence 396874 from Patent EP1572962.
JD325614 - Sequence 306638 from Patent EP1572962.
JD525825 - Sequence 506849 from Patent EP1572962.
JD254067 - Sequence 235091 from Patent EP1572962.
JD254442 - Sequence 235466 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_keratinocytePathway - Keratinocyte Differentiation

Reactome (by CSHL, EBI, and GO)

Protein P05129 (Reactome details) participates in the following event(s):

R-HSA-114553 Activation of conventional Protein Kinase C
R-HSA-8982703 PKC binds active G alpha (z)
R-HSA-8982709 G-alpha(z):PKC dissociates to give phosphorylated G alpha (z)
R-HSA-114683 Phosphorylation of Platelet Sec-1
R-HSA-114684 Phosphorylation of Syntaxin-4
R-HSA-416639 Trafficking of GluR2-containing AMPA receptors to extrasynaptic sites
R-HSA-421007 Endocytosis of Ca impermeable AMPA receptors
R-HSA-5138432 DVL2 is phosphorylated by PKC
R-HSA-111970 PKC phosphorylates GRK2
R-HSA-751040 PKC phosphorylates G alpha (z)
R-HSA-76005 Response to elevated platelet cytosolic Ca2+
R-HSA-76002 Platelet activation, signaling and aggregation
R-HSA-418597 G alpha (z) signalling events
R-HSA-114516 Disinhibition of SNARE formation
R-HSA-416993 Trafficking of GluR2-containing AMPA receptors
R-HSA-5099900 WNT5A-dependent internalization of FZD4
R-HSA-111933 Calmodulin induced events
R-HSA-109582 Hemostasis
R-HSA-388396 GPCR downstream signalling
R-HSA-399719 Trafficking of AMPA receptors
R-HSA-4086400 PCP/CE pathway
R-HSA-111997 CaM pathway
R-HSA-372790 Signaling by GPCR
R-HSA-399721 Glutamate binding, activation of AMPA receptors and synaptic plasticity
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-111996 Ca-dependent events
R-HSA-1489509 DAG and IP3 signaling
R-HSA-162582 Signal Transduction
R-HSA-112314 Neurotransmitter receptors and postsynaptic signal transmission
R-HSA-195721 Signaling by WNT
R-HSA-112043 PLC beta mediated events
R-HSA-9006925 Intracellular signaling by second messengers
R-HSA-112315 Transmission across Chemical Synapses
R-HSA-112040 G-protein mediated events
R-HSA-112316 Neuronal System
R-HSA-111885 Opioid Signalling
R-HSA-418594 G alpha (i) signalling events

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z8Q0, ENST00000263431.1, ENST00000263431.2, ENST00000263431.3, KPCG_HUMAN, NM_002739, P05129, PKCG, uc317hjt.1, uc317hjt.2
UCSC ID: ENST00000263431.4_4
RefSeq Accession: NM_002739.5
Protein: P05129 (aka KPCG_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene PRKCG:
ataxias (Hereditary Ataxia Overview)
sca14 (Spinocerebellar Ataxia Type 14)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.