Human Gene RCC2 (ENST00000375436.9_7) from GENCODE V47lift37
  Description: regulator of chromosome condensation 2, transcript variant 1 (from RefSeq NM_018715.4)
Gencode Transcript: ENST00000375436.9_7
Gencode Gene: ENSG00000179051.14_10
Transcript (Including UTRs)
   Position: hg19 chr1:17,733,256-17,766,173 Size: 32,918 Total Exon Count: 13 Strand: -
Coding Region
   Position: hg19 chr1:17,735,586-17,765,010 Size: 29,425 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:17,733,256-17,766,173)mRNA (may differ from genome)Protein (522 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RCC2_HUMAN
DESCRIPTION: RecName: Full=Protein RCC2; AltName: Full=RCC1-like protein TD-60; AltName: Full=Telophase disk protein of 60 kDa;
FUNCTION: Required for completion of mitosis and cytokinesis. May function as a guanine nucleotide exchange factor for the small GTPase RAC1.
SUBUNIT: Binds preferentially to the nucleotide-free form of RAC1. Interacts with microtubules.
SUBCELLULAR LOCATION: Nucleus, nucleolus. Chromosome, centromere. Cytoplasm, cytoskeleton, spindle. Note=Appears in the nucleus at G2, then concentrates at the inner centromere region of chromosomes during prophase. Redistributes to the midzone of the mitotic spindle during anaphase. Here, the protein covers the entire equatorial diameter from cortex to cortex.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Contains 7 RCC1 repeats.
SEQUENCE CAUTION: Sequence=BAA95994.1; Type=Erroneous initiation; Sequence=CAB94882.1; Type=Frameshift; Positions=477;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 52.26 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 868.74 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -32.80141-0.233 Picture PostScript Text
3' UTR -766.902330-0.329 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000408 - Reg_chr_condens
IPR009091 - Reg_csome_cond/b-lactamase_inh

Pfam Domains:
PF00415 - Regulator of chromosome condensation (RCC1) repeat
PF13540 - Regulator of chromosome condensation (RCC1) repeat

SCOP Domains:
50965 - Galactose oxidase, central domain
50985 - RCC1/BLIP-II

ModBase Predicted Comparative 3D Structure on Q9P258
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0008017 microtubule binding
GO:0019901 protein kinase binding
GO:0019904 protein domain specific binding
GO:0031267 small GTPase binding
GO:0048365 Rac GTPase binding

Biological Process:
GO:0007049 cell cycle
GO:0007229 integrin-mediated signaling pathway
GO:0010762 regulation of fibroblast migration
GO:0010971 positive regulation of G2/M transition of mitotic cell cycle
GO:0030334 regulation of cell migration
GO:0034260 negative regulation of GTPase activity
GO:0045184 establishment of protein localization
GO:0048041 focal adhesion assembly
GO:0051301 cell division
GO:0051895 negative regulation of focal adhesion assembly
GO:0051987 positive regulation of attachment of spindle microtubules to kinetochore
GO:0072356 chromosome passenger complex localization to kinetochore
GO:0090630 activation of GTPase activity
GO:1900025 negative regulation of substrate adhesion-dependent cell spreading
GO:1900027 regulation of ruffle assembly

Cellular Component:
GO:0000775 chromosome, centromeric region
GO:0005634 nucleus
GO:0005694 chromosome
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005819 spindle
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005886 plasma membrane
GO:0030496 midbody
GO:0031901 early endosome membrane
GO:0034506 chromosome, centromeric core domain
GO:1990023 mitotic spindle midzone
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  LF383924 - JP 2014500723-A/191427: Polycomb-Associated Non-Coding RNAs.
AL359612 - Homo sapiens mRNA; cDNA DKFZp762N0610 (from clone DKFZp762N0610).
AK126021 - Homo sapiens cDNA FLJ44033 fis, clone TESTI4028062.
BC142946 - Homo sapiens regulator of chromosome condensation 2, mRNA (cDNA clone IMAGE:8860329), partial cds.
AB040903 - Homo sapiens KIAA1470 mRNA for KIAA1470 protein.
AJ421269 - Homo sapiens mRNA for RCC1-like protein (TD-60 gene).
JD565843 - Sequence 546867 from Patent EP1572962.
LF357196 - JP 2014500723-A/164699: Polycomb-Associated Non-Coding RNAs.
JD508549 - Sequence 489573 from Patent EP1572962.
JD342571 - Sequence 323595 from Patent EP1572962.
DQ589188 - Homo sapiens piRNA piR-56300, complete sequence.
JD071510 - Sequence 52534 from Patent EP1572962.
JD173378 - Sequence 154402 from Patent EP1572962.
JD394189 - Sequence 375213 from Patent EP1572962.
JD154431 - Sequence 135455 from Patent EP1572962.
JD438347 - Sequence 419371 from Patent EP1572962.
JD326394 - Sequence 307418 from Patent EP1572962.
BC004933 - Homo sapiens regulator of chromosome condensation 2, mRNA (cDNA clone IMAGE:3531803), partial cds.
AK026005 - Homo sapiens cDNA: FLJ22352 fis, clone HRC06328.
JD173871 - Sequence 154895 from Patent EP1572962.
LF357195 - JP 2014500723-A/164698: Polycomb-Associated Non-Coding RNAs.
JD544175 - Sequence 525199 from Patent EP1572962.
JD426863 - Sequence 407887 from Patent EP1572962.
JD095947 - Sequence 76971 from Patent EP1572962.
LF357194 - JP 2014500723-A/164697: Polycomb-Associated Non-Coding RNAs.
JD519942 - Sequence 500966 from Patent EP1572962.
JD291333 - Sequence 272357 from Patent EP1572962.
JD142711 - Sequence 123735 from Patent EP1572962.
JD257371 - Sequence 238395 from Patent EP1572962.
JD221021 - Sequence 202045 from Patent EP1572962.
JD545287 - Sequence 526311 from Patent EP1572962.
JD090124 - Sequence 71148 from Patent EP1572962.
JD429142 - Sequence 410166 from Patent EP1572962.
BC053908 - Homo sapiens regulator of chromosome condensation 2, mRNA (cDNA clone MGC:61610 IMAGE:6502476), complete cds.
GQ901050 - Homo sapiens clone HEL-T-162 epididymis secretory sperm binding protein mRNA, complete cds.
JD051537 - Sequence 32561 from Patent EP1572962.
JD254298 - Sequence 235322 from Patent EP1572962.
JD359819 - Sequence 340843 from Patent EP1572962.
BC042141 - Homo sapiens regulator of chromosome condensation 2, mRNA (cDNA clone MGC:52285 IMAGE:5932549), complete cds.
LF357193 - JP 2014500723-A/164696: Polycomb-Associated Non-Coding RNAs.
JD142073 - Sequence 123097 from Patent EP1572962.
JD051178 - Sequence 32202 from Patent EP1572962.
AB384219 - Synthetic construct DNA, clone: pF1KSDA1470, Homo sapiens RCC2 gene for regulator of chromosome condensation 2, complete cds, without stop codon, in Flexi system.
LF357192 - JP 2014500723-A/164695: Polycomb-Associated Non-Coding RNAs.
LF357191 - JP 2014500723-A/164694: Polycomb-Associated Non-Coding RNAs.
LF357190 - JP 2014500723-A/164693: Polycomb-Associated Non-Coding RNAs.
JD186847 - Sequence 167871 from Patent EP1572962.
MA619501 - JP 2018138019-A/191427: Polycomb-Associated Non-Coding RNAs.
MA592773 - JP 2018138019-A/164699: Polycomb-Associated Non-Coding RNAs.
MA592772 - JP 2018138019-A/164698: Polycomb-Associated Non-Coding RNAs.
MA592771 - JP 2018138019-A/164697: Polycomb-Associated Non-Coding RNAs.
MA592770 - JP 2018138019-A/164696: Polycomb-Associated Non-Coding RNAs.
MA592769 - JP 2018138019-A/164695: Polycomb-Associated Non-Coding RNAs.
MA592768 - JP 2018138019-A/164694: Polycomb-Associated Non-Coding RNAs.
MA592767 - JP 2018138019-A/164693: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9P258 (Reactome details) participates in the following event(s):

R-HSA-141409 Mad1 binds kinetochore
R-HSA-375302 Kinetochore capture of astral microtubules
R-HSA-5666129 CDC42:GTP recruits DIAPH2-2 to kinetochores
R-HSA-5666169 Kinetochore capture of astral microtubules is positively regulated by CDC42:GTP:p-S196-DIAPH2-2
R-HSA-141431 MAD2 associates with the Mad1 kinetochore complex
R-HSA-141439 Release of activated MAD2 from kinetochores
R-HSA-2467811 Separation of sister chromatids
R-HSA-2467809 ESPL1 (Separase) cleaves centromeric cohesin
R-HSA-5666160 AURKB phosphorylates DIAPH2-2 at kinetochores
R-HSA-141422 MAD2 converted to an inhibitory state via interaction with Mad1
R-HSA-1638821 PP2A-B56 dephosphorylates centromeric cohesin
R-HSA-1638803 Phosphorylation of cohesin by PLK1 at centromeres
R-HSA-2468287 CDK1 phosphorylates CDCA5 (Sororin) at centromeres
R-HSA-141444 Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
R-HSA-68877 Mitotic Prometaphase
R-HSA-5663220 RHO GTPases Activate Formins
R-HSA-2500257 Resolution of Sister Chromatid Cohesion
R-HSA-2467813 Separation of Sister Chromatids
R-HSA-141424 Amplification of signal from the kinetochores
R-HSA-68886 M Phase
R-HSA-195258 RHO GTPase Effectors
R-HSA-68882 Mitotic Anaphase
R-HSA-69618 Mitotic Spindle Checkpoint
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-194315 Signaling by Rho GTPases
R-HSA-2555396 Mitotic Metaphase and Anaphase
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-1640170 Cell Cycle
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000375436.1, ENST00000375436.2, ENST00000375436.3, ENST00000375436.4, ENST00000375436.5, ENST00000375436.6, ENST00000375436.7, ENST00000375436.8, KIAA1470, NM_018715, Q8IVL9, Q9BSN6, Q9NPV8, Q9P258, RCC2_HUMAN, TD60, uc318mgj.1, uc318mgj.2
UCSC ID: ENST00000375436.9_7
RefSeq Accession: NM_018715.4
Protein: Q9P258 (aka RCC2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.