Human Gene SLC51B (ENST00000334287.3_4) from GENCODE V47lift37
  Description: solute carrier family 51 subunit beta (from RefSeq NM_178859.4)
Gencode Transcript: ENST00000334287.3_4
Gencode Gene: ENSG00000186198.4_7
Transcript (Including UTRs)
   Position: hg19 chr15:65,337,725-65,345,735 Size: 8,011 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr15:65,342,343-65,345,502 Size: 3,160 Coding Exon Count: 3 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:65,337,725-65,345,735)mRNA (may differ from genome)Protein (128 aa)
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: OSTB_HUMAN
DESCRIPTION: RecName: Full=Organic solute transporter subunit beta; Short=OST-beta; AltName: Full=Solute carrier family 51 subunit beta;
FUNCTION: Essential component of the Ost-alpha/Ost-beta complex, a heterodimer that acts as the intestinal basolateral transporter responsible for bile acid export from enterocytes into portal blood. Efficiently transports the major species of bile acids. Modulates SLC51A glycosylation, membrane trafficking and stability activities.
SUBUNIT: Interacts with SLC51A. The Ost-alpha/Ost-beta complex is a heterodimer composed of alpha (SLC51A) and beta (SLC51B) subunit; induces the transport of SLC51A from the reticulum endoplasmic to the plasma membrane (By similarity).
SUBCELLULAR LOCATION: Cell membrane; Single-pass membrane protein. Note=Mainly restricted to the lateral and basal membranes of ileal enterocytes.
TISSUE SPECIFICITY: Widely expressed with a high expression in ileum. Expressed in testis, colon, liver, small intestine, kidney, ovary and adrenal gland; and at low levels in heart, lung, brain, pituitary, thyroid gland, uterus, prostate, mammary gland and fat.
INDUCTION: Positively regulated via NR1H4/FXR.
DOMAIN: The transmembrane domain (TM) is the major site of interaction with SLC51A. The extracellular-membrane interface is absolutely required for transport activity. The intracellular- membrane interface is necessary for establishing the correct membrane orientation that is essential for the heterodimer Ost- alpha/Ost-beta complex formation and transport activity at the cell membrane surface (By similarity).
SIMILARITY: Belongs to the OST-beta family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SLC51B
Diseases sorted by gene-association score: bile duct disease (2), biliary tract disease (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 40.94 RPKM in Small Intestine - Terminal Ileum
Total median expression: 140.06 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -117.80304-0.388 Picture PostScript Text
3' UTR -56.87233-0.244 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF15048 - Organic solute transporter subunit beta protein

ModBase Predicted Comparative 3D Structure on Q86UW2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005215 transporter activity
GO:0015125 bile acid transmembrane transporter activity
GO:0022857 transmembrane transporter activity
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0015721 bile acid and bile salt transport
GO:0031647 regulation of protein stability
GO:0032782 bile acid secretion
GO:0055085 transmembrane transport
GO:0060050 positive regulation of protein glycosylation
GO:0070863 positive regulation of protein exit from endoplasmic reticulum
GO:0071702 organic substance transport
GO:0090314 positive regulation of protein targeting to membrane

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016323 basolateral plasma membrane
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  JD211769 - Sequence 192793 from Patent EP1572962.
JD337160 - Sequence 318184 from Patent EP1572962.
JD126342 - Sequence 107366 from Patent EP1572962.
AK129601 - Homo sapiens cDNA FLJ26090 fis, clone RCT06292.
JD500721 - Sequence 481745 from Patent EP1572962.
JD415670 - Sequence 396694 from Patent EP1572962.
JD372468 - Sequence 353492 from Patent EP1572962.
JD138757 - Sequence 119781 from Patent EP1572962.
JD179464 - Sequence 160488 from Patent EP1572962.
AY194242 - Homo sapiens organic solute transporter beta mRNA, complete cds.
BC103842 - Homo sapiens organic solute transporter beta, mRNA (cDNA clone MGC:118959 IMAGE:40002450), complete cds.
BC103843 - Homo sapiens organic solute transporter beta, mRNA (cDNA clone MGC:118960 IMAGE:40002452), complete cds.
BC103844 - Homo sapiens organic solute transporter beta, mRNA (cDNA clone MGC:118961 IMAGE:40002453), complete cds.
JD239567 - Sequence 220591 from Patent EP1572962.
JD319828 - Sequence 300852 from Patent EP1572962.
KJ895377 - Synthetic construct Homo sapiens clone ccsbBroadEn_04771 OSTBETA gene, encodes complete protein.
JD103598 - Sequence 84622 from Patent EP1572962.
JD189991 - Sequence 171015 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000334287.1, ENST00000334287.2, NM_178859, OSTB, OSTB_HUMAN, Q3SYF5, Q86UW2, uc317txj.1, uc317txj.2
UCSC ID: ENST00000334287.3_4
RefSeq Accession: NM_178859.4
Protein: Q86UW2 (aka OSTB_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.