Human Gene ZNF24 (ENST00000261332.11_7) from GENCODE V47lift37
  Description: zinc finger protein 24, transcript variant 1 (from RefSeq NM_006965.4)
Gencode Transcript: ENST00000261332.11_7
Gencode Gene: ENSG00000172466.16_11
Transcript (Including UTRs)
   Position: hg19 chr18:32,912,191-32,924,384 Size: 12,194 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr18:32,917,196-32,920,614 Size: 3,419 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr18:32,912,191-32,924,384)mRNA (may differ from genome)Protein (368 aa)
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-  Comments and Description Text from UniProtKB
  ID: ZNF24_HUMAN
DESCRIPTION: RecName: Full=Zinc finger protein 24; AltName: Full=Retinoic acid suppression protein A; Short=RSG-A; AltName: Full=Zinc finger and SCAN domain-containing protein 3; AltName: Full=Zinc finger protein 191; AltName: Full=Zinc finger protein KOX17;
FUNCTION: Transcription factor required for myelination of differentiated oligodendrocytes. Required for the conversion of oligodendrocytes from the premyelinating to the myelinating state. In the developing central nervous system (CNS), involved in the maintenance in the progenitor stage by promoting the cell cycle. Specifically bind to the 5'-TCAT-3' DNA sequence (By similarity). Has transcription repressor activity in vitro.
INTERACTION: P51693:APLP1; NbExp=2; IntAct=EBI-707773, EBI-74648; Q9BU74:ZNF434; NbExp=3; IntAct=EBI-707773, EBI-739949;
SUBCELLULAR LOCATION: Nucleus.
TISSUE SPECIFICITY: Expressed in many tissues except in heart.
PTM: Sumoylated.
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
SIMILARITY: Belongs to the krueppel C2H2-type zinc-finger protein family.
SIMILARITY: Contains 4 C2H2-type zinc fingers.
SIMILARITY: Contains 1 SCAN box domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 12.73 RPKM in Brain - Spinal cord (cervical c-1)
Total median expression: 475.32 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -42.90144-0.298 Picture PostScript Text
3' UTR -1245.205005-0.249 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008916 - Retrov_capsid_C
IPR003309 - Tscrpt_reg_SCAN
IPR007087 - Znf_C2H2
IPR015880 - Znf_C2H2-like
IPR013087 - Znf_C2H2/integrase_DNA-bd

Pfam Domains:
PF00096 - Zinc finger, C2H2 type
PF02023 - SCAN domain
PF13912 - C2H2-type zinc finger

SCOP Domains:
47353 - Retrovirus capsid dimerization domain-like
57667 - beta-beta-alpha zinc fingers
57716 - Glucocorticoid receptor-like (DNA-binding domain)
57783 - Zinc beta-ribbon
57802 - Rubredoxin-like
57889 - Cysteine-rich domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1X6E - NMR MuPIT 3LHR - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P17028
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0043565 sequence-specific DNA binding
GO:0046872 metal ion binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter
GO:0042552 myelination
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045944 positive regulation of transcription from RNA polymerase II promoter

Cellular Component:
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  LF210987 - JP 2014500723-A/18490: Polycomb-Associated Non-Coding RNAs.
AK021966 - Homo sapiens cDNA FLJ11904 fis, clone HEMBB1000048.
JD023389 - Sequence 4413 from Patent EP1572962.
JD028797 - Sequence 9821 from Patent EP1572962.
AF230200 - Homo sapiens OVN6-2 mRNA, partial cds.
JD019301 - Sequence 325 from Patent EP1572962.
JD033297 - Sequence 14321 from Patent EP1572962.
JD028209 - Sequence 9233 from Patent EP1572962.
U68536 - Human zinc finger protein mRNA, complete cds.
LF342785 - JP 2014500723-A/150288: Polycomb-Associated Non-Coding RNAs.
JD556180 - Sequence 537204 from Patent EP1572962.
JD490577 - Sequence 471601 from Patent EP1572962.
LF342786 - JP 2014500723-A/150289: Polycomb-Associated Non-Coding RNAs.
JD226064 - Sequence 207088 from Patent EP1572962.
JD110050 - Sequence 91074 from Patent EP1572962.
LF342787 - JP 2014500723-A/150290: Polycomb-Associated Non-Coding RNAs.
JD134499 - Sequence 115523 from Patent EP1572962.
AK291246 - Homo sapiens cDNA FLJ75933 complete cds, highly similar to Homo sapiens zinc finger protein 24 (KOX 17) (ZNF24), mRNA.
JD286303 - Sequence 267327 from Patent EP1572962.
AF038964 - Homo sapiens retinoic acid suppression protein A (RSG-A) mRNA, complete cds.
JD328339 - Sequence 309363 from Patent EP1572962.
JD368015 - Sequence 349039 from Patent EP1572962.
LF342788 - JP 2014500723-A/150291: Polycomb-Associated Non-Coding RNAs.
BC003566 - Homo sapiens zinc finger protein 24, mRNA (cDNA clone MGC:2057 IMAGE:3537160), complete cds.
BC016801 - Homo sapiens zinc finger protein 24, mRNA (cDNA clone MGC:24422 IMAGE:4072599), complete cds.
BT006658 - Homo sapiens zinc finger protein 24 (KOX 17) mRNA, complete cds.
HQ257967 - Synthetic construct Homo sapiens clone IMAGE:100072276 zinc finger protein 24 (ZNF24) (ZNF24) gene, encodes complete protein.
KJ897759 - Synthetic construct Homo sapiens clone ccsbBroadEn_07153 ZNF24 gene, encodes complete protein.
KJ897760 - Synthetic construct Homo sapiens clone ccsbBroadEn_07154 ZNF24 gene, encodes complete protein.
KR709847 - Synthetic construct Homo sapiens clone CCSBHm_00006801 ZNF24 (ZNF24) mRNA, encodes complete protein.
AB528971 - Synthetic construct DNA, clone: pF1KB7622, Homo sapiens ZNF24 gene for zinc finger protein 24, without stop codon, in Flexi system.
CR450328 - Homo sapiens full open reading frame cDNA clone RZPDo834H021D for gene ZNF24, zinc finger protein 24 (KOX 17); complete cds; without stopcodon.
X52348 - Human Kox17 mRNA for zinc finger protein, partial.
LF342789 - JP 2014500723-A/150292: Polycomb-Associated Non-Coding RNAs.
CU678508 - Synthetic construct Homo sapiens gateway clone IMAGE:100018178 5' read ZNF24 mRNA.
AF542097 - Homo sapiens truncated zinc finger protein isoform (ZNF24) mRNA, complete cds.
LF342790 - JP 2014500723-A/150293: Polycomb-Associated Non-Coding RNAs.
LF342791 - JP 2014500723-A/150294: Polycomb-Associated Non-Coding RNAs.
JD358480 - Sequence 339504 from Patent EP1572962.
JD491396 - Sequence 472420 from Patent EP1572962.
MA578362 - JP 2018138019-A/150288: Polycomb-Associated Non-Coding RNAs.
MA578363 - JP 2018138019-A/150289: Polycomb-Associated Non-Coding RNAs.
MA578364 - JP 2018138019-A/150290: Polycomb-Associated Non-Coding RNAs.
MA578365 - JP 2018138019-A/150291: Polycomb-Associated Non-Coding RNAs.
MA578366 - JP 2018138019-A/150292: Polycomb-Associated Non-Coding RNAs.
MA578367 - JP 2018138019-A/150293: Polycomb-Associated Non-Coding RNAs.
MA578368 - JP 2018138019-A/150294: Polycomb-Associated Non-Coding RNAs.
MA446564 - JP 2018138019-A/18490: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000261332.1, ENST00000261332.10, ENST00000261332.2, ENST00000261332.3, ENST00000261332.4, ENST00000261332.5, ENST00000261332.6, ENST00000261332.7, ENST00000261332.8, ENST00000261332.9, KOX17, NM_006965, O14754, P17028, Q53YE4, Q6ICR5, Q8IZN4, uc317gou.1, uc317gou.2, ZNF191, ZNF24_HUMAN, ZSCAN3
UCSC ID: ENST00000261332.11_7
RefSeq Accession: NM_006965.4
Protein: P17028 (aka ZNF24_HUMAN or ZN24_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.