UCSC Genome Browser Gene Interaction Graph

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Gene interactions and pathways from curated databases and text-mining

UPF3B: top 25 interacting genes (chrX:118967984-118986926)

Mouse over or click genes or lines for details. Dashed lines indicate interactions without text mining support. Click any gene to make it the new center. Click any line to show details about the interaction. Only UPF3B-interacting genes and only the most-mentioned/most-curated interactions are shown in the graph. See the Help Page for details.

Less-frequently mentioned interactions with UPF3B, not among the Top 25

Other genes interacting with UPF3B. Mouse-over to show number of abstracts or databases. Sorted alphabetically (sort by article count).
Like above, interactions are colored by support. Grey:only text mining, light-blue:interaction database, blue:pathway database

ALYREF ▸ ANKRD28 ▸ ATP5O ▸ BEND3 ▸ BRF1 ▸ CAND1 ▸ CASC3 ▸
COPS5 ▸ CUL5 ▸ DCP1A ▸ DDX39B ▸ DHH ▸ EIF3E ▸ EIF4G1 ▸
EIF6 ▸ EXOSC10 ▸ EXOSC2 ▸ EXOSC4 ▸ FUCA1 ▸ GSPT2 ▸ GTF2F1 ▸
GTF2F2 ▸ HNRNPA0 ▸ HNRNPA1 ▸ HNRNPA2B1 ▸ HNRNPA3 ▸ HNRNPC ▸ HNRNPD ▸
HNRNPF ▸ HNRNPH1 ▸ HNRNPH2 ▸ HNRNPK ▸ HNRNPL ▸ HNRNPM ▸ HNRNPR ▸
HNRNPU ▸ HNRNPUL1 ▸ HSPA8 ▸ ITGB3BP ▸ KHSRP ▸ MAGOH ▸ MAGOHB ▸
MARK1 ▸ MARK2 ▸ MARK3 ▸ MCRS1 ▸ NCBP2 ▸ NHP2L1 ▸ NUDT21 ▸
NXF1 ▸ NXF2 ▸ NXF2B ▸ NXF3 ▸ NXF5 ▸ PABPN1 ▸ PAPOLA ▸
PARN ▸ PCBP1 ▸ PCBP2 ▸ PCF11 ▸ PDP1 ▸ PHF5A ▸ PLRG1 ▸
POLDIP3 ▸ POLR2A ▸ POLR2B ▸ POLR2C ▸ POLR2D ▸ POLR2E ▸ POLR2F ▸
POLR2G ▸ POLR2H ▸ POLR2I ▸ POLR2J ▸ POLR2K ▸ POLR2L ▸ PPIB ▸
PPP2CA ▸ PPP2R1A ▸ PPP2R2A ▸ PPP6R3 ▸ PRKCI ▸ PRPF19 ▸ PRPF4 ▸
PRPF6 ▸ PRPF8 ▸ PTBP1 ▸ RBBP6 ▸ RBM45 ▸ RBM5 ▸ RBM8A ▸
RBMX ▸ RBP1 ▸ RNASE3 ▸ RNASEL ▸ RNPS1 ▸ RPL10 ▸ RPL10A ▸
RPL11 ▸ RPL12 ▸ RPL13 ▸ RPL13A ▸ RPL14 ▸ RPL15 ▸ RPL17 ▸
RPL18 ▸ RPL18A ▸ RPL19 ▸ RPL21 ▸ RPL22 ▸ RPL23 ▸ RPL23A ▸
RPL24 ▸ RPL26 ▸ RPL26L1 ▸ RPL27 ▸ RPL27A ▸ RPL28 ▸ RPL29 ▸
RPL3 ▸ RPL30 ▸ RPL31 ▸ RPL32 ▸ RPL34 ▸ RPL35 ▸ RPL35A ▸
RPL36 ▸ RPL36A ▸ RPL37 ▸ RPL37A ▸ RPL38 ▸ RPL39 ▸ RPL3L ▸
RPL4 ▸ RPL41 ▸ RPL5 ▸ RPL6 ▸ RPL7 ▸ RPL7A ▸ RPL8 ▸
RPL9 ▸ RPLP0 ▸ RPLP1 ▸ RPLP2 ▸ RPS10 ▸ RPS11 ▸ RPS12 ▸
RPS13 ▸ RPS14 ▸ RPS15 ▸ RPS15A ▸ RPS16 ▸ RPS17 ▸ RPS18 ▸
RPS19 ▸ RPS2 ▸ RPS20 ▸ RPS21 ▸ RPS23 ▸ RPS24 ▸ RPS25 ▸
RPS26 ▸ RPS27 ▸ RPS27A ▸ RPS28 ▸ RPS29 ▸ RPS3 ▸ RPS3A ▸
RPS4X ▸ RPS4Y1 ▸ RPS5 ▸ RPS6 ▸ RPS7 ▸ RPS8 ▸ RPS9 ▸
RPSA ▸ SAP18 ▸ SART1 ▸ SF3A1 ▸ SF3A2 ▸ SF3A3 ▸ SF3B1 ▸
SF3B2 ▸ SF3B3 ▸ SF3B4 ▸ SF3B5 ▸ SMC1A ▸ SMG1 ▸ SMG5 ▸
SMG8 ▸ SMG9 ▸ SNRNP200 ▸ SNRNP40 ▸ SNRPA1 ▸ SNRPB ▸ SNRPB2 ▸
SNRPD1 ▸ SNRPD2 ▸ SNRPD3 ▸ SNRPE ▸ SNRPF ▸ SNRPG ▸ SRRM1 ▸
SRSF1 ▸ SRSF11 ▸ SRSF2 ▸ SRSF3 ▸ SRSF4 ▸ SRSF5 ▸ SRSF6 ▸
SRSF7 ▸ SRSF9 ▸ SUGP1 ▸ THRAP3 ▸ TOP2A ▸ TTC19 ▸ TXNL4A ▸
U2AF1 ▸ U2AF2 ▸ UBA52 ▸ UBC ▸ UCHL1 ▸ USP20 ▸ USP21 ▸
USP48 ▸ UTRN ▸ WBP11 ▸ WIBG ▸ XRN2 ▸ YBX1 ▸ ZC3HAV1 ▸

Data information

Please see the Gene Interactions Track Manual.

ALYREF ▸	ANKRD28 ▸	ATP5O ▸	BEND3 ▸	BRF1 ▸	CAND1 ▸	CASC3 ▸
COPS5 ▸	CUL5 ▸	DCP1A ▸	DDX39B ▸	DHH ▸	EIF3E ▸	EIF4G1 ▸
EIF6 ▸	EXOSC10 ▸	EXOSC2 ▸	EXOSC4 ▸	FUCA1 ▸	GSPT2 ▸	GTF2F1 ▸
GTF2F2 ▸	HNRNPA0 ▸	HNRNPA1 ▸	HNRNPA2B1 ▸	HNRNPA3 ▸	HNRNPC ▸	HNRNPD ▸
HNRNPF ▸	HNRNPH1 ▸	HNRNPH2 ▸	HNRNPK ▸	HNRNPL ▸	HNRNPM ▸	HNRNPR ▸
HNRNPU ▸	HNRNPUL1 ▸	HSPA8 ▸	ITGB3BP ▸	KHSRP ▸	MAGOH ▸	MAGOHB ▸
MARK1 ▸	MARK2 ▸	MARK3 ▸	MCRS1 ▸	NCBP2 ▸	NHP2L1 ▸	NUDT21 ▸
NXF1 ▸	NXF2 ▸	NXF2B ▸	NXF3 ▸	NXF5 ▸	PABPN1 ▸	PAPOLA ▸
PARN ▸	PCBP1 ▸	PCBP2 ▸	PCF11 ▸	PDP1 ▸	PHF5A ▸	PLRG1 ▸
POLDIP3 ▸	POLR2A ▸	POLR2B ▸	POLR2C ▸	POLR2D ▸	POLR2E ▸	POLR2F ▸
POLR2G ▸	POLR2H ▸	POLR2I ▸	POLR2J ▸	POLR2K ▸	POLR2L ▸	PPIB ▸
PPP2CA ▸	PPP2R1A ▸	PPP2R2A ▸	PPP6R3 ▸	PRKCI ▸	PRPF19 ▸	PRPF4 ▸
PRPF6 ▸	PRPF8 ▸	PTBP1 ▸	RBBP6 ▸	RBM45 ▸	RBM5 ▸	RBM8A ▸
RBMX ▸	RBP1 ▸	RNASE3 ▸	RNASEL ▸	RNPS1 ▸	RPL10 ▸	RPL10A ▸
RPL11 ▸	RPL12 ▸	RPL13 ▸	RPL13A ▸	RPL14 ▸	RPL15 ▸	RPL17 ▸
RPL18 ▸	RPL18A ▸	RPL19 ▸	RPL21 ▸	RPL22 ▸	RPL23 ▸	RPL23A ▸
RPL24 ▸	RPL26 ▸	RPL26L1 ▸	RPL27 ▸	RPL27A ▸	RPL28 ▸	RPL29 ▸
RPL3 ▸	RPL30 ▸	RPL31 ▸	RPL32 ▸	RPL34 ▸	RPL35 ▸	RPL35A ▸
RPL36 ▸	RPL36A ▸	RPL37 ▸	RPL37A ▸	RPL38 ▸	RPL39 ▸	RPL3L ▸
RPL4 ▸	RPL41 ▸	RPL5 ▸	RPL6 ▸	RPL7 ▸	RPL7A ▸	RPL8 ▸
RPL9 ▸	RPLP0 ▸	RPLP1 ▸	RPLP2 ▸	RPS10 ▸	RPS11 ▸	RPS12 ▸
RPS13 ▸	RPS14 ▸	RPS15 ▸	RPS15A ▸	RPS16 ▸	RPS17 ▸	RPS18 ▸
RPS19 ▸	RPS2 ▸	RPS20 ▸	RPS21 ▸	RPS23 ▸	RPS24 ▸	RPS25 ▸
RPS26 ▸	RPS27 ▸	RPS27A ▸	RPS28 ▸	RPS29 ▸	RPS3 ▸	RPS3A ▸
RPS4X ▸	RPS4Y1 ▸	RPS5 ▸	RPS6 ▸	RPS7 ▸	RPS8 ▸	RPS9 ▸
RPSA ▸	SAP18 ▸	SART1 ▸	SF3A1 ▸	SF3A2 ▸	SF3A3 ▸	SF3B1 ▸
SF3B2 ▸	SF3B3 ▸	SF3B4 ▸	SF3B5 ▸	SMC1A ▸	SMG1 ▸	SMG5 ▸
SMG8 ▸	SMG9 ▸	SNRNP200 ▸	SNRNP40 ▸	SNRPA1 ▸	SNRPB ▸	SNRPB2 ▸
SNRPD1 ▸	SNRPD2 ▸	SNRPD3 ▸	SNRPE ▸	SNRPF ▸	SNRPG ▸	SRRM1 ▸
SRSF1 ▸	SRSF11 ▸	SRSF2 ▸	SRSF3 ▸	SRSF4 ▸	SRSF5 ▸	SRSF6 ▸
SRSF7 ▸	SRSF9 ▸	SUGP1 ▸	THRAP3 ▸	TOP2A ▸	TTC19 ▸	TXNL4A ▸
U2AF1 ▸	U2AF2 ▸	UBA52 ▸	UBC ▸	UCHL1 ▸	USP20 ▸	USP21 ▸
USP48 ▸	UTRN ▸	WBP11 ▸	WIBG ▸	XRN2 ▸	YBX1 ▸	ZC3HAV1 ▸