Manage Custom Tracks
 
Genome: Mouse    Assembly: Dec. 2011 (GRCm38/mm10)    [mm10]
Name Description Type Doc Items Pos
RNAseq_wt_s1.bw Total RNAseq of mouse thymocytes wildtype sample.bigWig      
Ribofootprint_mir181a/b-1-KO_s2.bwRibosome footprint of mouse thymocytes with mir181a/b-1 knockout.bigWig      
Ribofootprint_mir181a/b-1-KO_s3.bwRibosome footprint of mouse thymocytes with mir181a/b-1 knockout.bigWig      
Ribofootprint_mir181a/b-1-KO_s1.bwRibosome footprint of mouse thymocytes with mir181a/b-1 knockout.bigWig      
RNAseq_mir181a/b-1-KO_s2.bwTotal RNAseq of mouse thymocytes with mir181a/b-1 knockout.bigWig      
RNAseq_mir181a/b-1-KO_s1.bwTotal RNAseq of mouse thymocytes with mir181a/b-1 knockout.bigWig      
RNAseq_wt_s2.bwTotal RNAseq of mouse thymocytes wildtype sample.bigWig      
RNAseq_mir181a/b-1-KO_s3.bwTotal RNAseq of mouse thymocytes with mir181a/b-1 knockout.bigWig      
Ribofootprint_wt_s3.bw Ribosome footprint of mouse thymocytes wildtype sample.bigWig      
Ribofootprint_wt_s2.bwRibosome footprint of mouse thymocytes wildtype sample.bigWig      
Ribofootprint_wt_s1.bwRibosome footprint of mouse thymocytes wildtype sample.bigWig      
RNAseq_wt_s3.bw Total RNAseq of mouse thymocytes wildtype sample.bigWig      
cl_miR181enr_miR181a/b-1-KO_minus.bwNon-chimeric crosslinks of Ago2 with enrichment for miR181, minus strand.bigWig      
cl_miR181enr_miR181a/b-1-KO_plus.bwNon-chimeric crosslinks of Ago2 with enrichment for miR181, plus strand.bigWig      
cl_Ago2IP_miR181a/b-1-KO_minus.bwNon-chimeric crosslinks, minus strand.bigWig      
chimeric_cl_miR181enr_miR181a/b-1-KO_minus.bedChimeric crosslinks of Ago2 with enrichment for miR181 and miR181a/b knockout, minus strand.bedGraph 15778chrX_GL456233_random:
chimeric_cl_miR181enr_miR181a/b-1-KO_plus.bedChimeric crosslinks of Ago2 with miR181 enrichment and miR181 knockout, plus strand.bedGraph 16820chr4_GL456216_random:
chimeric_cl_Ago2IP_miR181a/b-1-KO_minus.bedChimeric crosslinks of Ago2 with miR181a/b knockout, minus strand.bedGraph 78818chr4_GL456216_random:
chimeric_cl_Ago2IP_miR181a/b-1-KO_plus.bedChimeric crosslinks of Ago2 with miR181a/b knockout, plus strand.bedGraph 82022chr1_GL456211_random:
chimeric_cl_miR181enr_minus.bedChimeric crosslinks of Ago2 with enrichment for miR181, minus strand.bedGraph 209317chr1_GL456211_random:
chimeric_cl_miR181enr_plus.bedChimeric crosslinks of Ago2 with enrichment for miR181, minus strand.bedGraph 210778chr1_GL456210_random:
chimeric_cl_Ago2_minus.bedChimeric crosslinks of Ago2, minus strand.bedGraph 99728chr1_GL456212_random:
chimeric_cl_Ago2_plus.bedChimeric crosslinks of Ago2, plus strand.bedGraph 104412chr4_GL456216_random:
Ago2_binding_sites.bedAgo2 binding sitesbedGraph 27498chr1:
miR181a/b-1-KO_Ago2_binding_sites.bedAgo2 binding sites with _miR181a/b-1 knockout.bedGraph 21823chr1:
miR181enr_Ago2_binding_sites.bedAgo2 binding sites with miR181 enrichment.bedGraph 6724chr1:
Differential_Ago2_binding_sites_miR181a/b-1-KO_vs_ctrl.bedDifferential binding sites of Ago2 with significant changes ( P < 0.05) between miR181a/b-1 knockout and control. Score annotates the log2FoldChange.bedGraph 1074chr1:
cl_Ago2IP_minus.bwNon-chimeric crosslinks of Ago2, minus strand.bigWig      
cl_Ago2IP_plus.bwNon-chimeric crosslinks of Ago2, plus strand.bigWig      
cl_miR181enr_minus.bwNon-chimeric crosslinks of Ago2 with enrichment for miR181, minus strand.bigWig      
cl_miR181enr_plus.bwNon-chimeric crosslinks of Ago2 with enrichment for miR181, plus strand.bigWig      
cl_Ago2IP_miR181a/b-1-KO_plus.bwNon-chimeric crosslinks of Ago2, plus strand.bigWig      
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Managing Custom Tracks
 

This section provides a brief description of the columns in custom track management table. For more details about managing custom tracks, see the Genome Browser User's Guide.

  • Name - a hyperlink to the update page where you can edit your track data.
  • Description - the value of the "description" attribute from the track line, if present. If no description is included in the input file, this field contains the track name.
  • Type - the track type, determined by the Browser based on the format of the data.
  • Doc - displays "Y" (Yes) if a description page has been uploaded for the track; otherwise the field is blank.
  • Items - the number of data items in the custom track file. An item count is not displayed for tracks lacking individual items (e.g. wiggle format data).
  • Pos - the default chromosomal position defined by the track file in either the browser line "position" attribute or the first data line. Clicking this link opens the Genome Browser or Table Browser at the specified position (note: only the chromosome name is shown in this column). The Pos column remains blank if the track lacks individual items (e.g. wiggle format data) and the browser line "position" attribute hasn't been set.