Schema for xenoMrna
  Database: anoGam1    Primary Table: xenoMrna    Row Count: 3,171,448   Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 73smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 237int(10) unsigned Number of bases that match that aren't repeats
misMatches 84int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 3int(10) unsigned Number of inserts in query
qBaseInsert 531int(10) unsigned Number of bases inserted in query
tNumInsert 4int(10) unsigned Number of inserts in target
tBaseInsert 189474int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName BT022201varchar(255) Query sequence name
qSize 1576int(10) unsigned Query sequence size
qStart 373int(10) unsigned Alignment start position in query
qEnd 1225int(10) unsigned Alignment end position in query
tName chr2Lvarchar(255) Target sequence name
tSize 48795086int(10) unsigned Target sequence size
tStart 9208int(10) unsigned Alignment start position in target
tEnd 199003int(10) unsigned Alignment end position in target
blockCount 6int(10) unsigned Number of blocks in alignment
blockSizes 39,75,99,54,27,27,longblob Size of each block
qStarts 373,823,898,997,1165,1198,longblob Start of each block in query.
tStarts 48596083,48690228,48785387,...longblob Start of each block in target.

Connected Tables and Joining Fields
        anoGam1.all_est.qName (via xenoMrna.qName)
      anoGam1.all_mrna.qName (via xenoMrna.qName)
      anoGam1.xenoRefFlat.name (via xenoMrna.qName)
      anoGam1.xenoRefGene.name (via xenoMrna.qName)
      anoGam1.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
73237840035314189474+-BT02220115763731225chr2L487950869208199003639,75,99,54,27,27,373,823,898,997,1165,1198,48596083,48690228,48785387,48785581,48785824,48785851,
75527718200353433200++MH03583021412651258chr3L4128400922403168224068274111,36,111,201,265,412,838,1057,22403168,22403315,22406246,22406626,
5866828000000++CR694895515416512chr2L48795086226640226736196,416,226640,
10262291490000146755+-MK86338057687465chrU5956803357846874578940072186,192,87,273,1674026,1720967,
9929237000000++FX3960424421130chr2R6272591153439860534399891129,1,53439860,
99452227900230227+-FX39496015142751106chr2R6272591153734115537349433510,210,81,275,794,1025,8990968,8991484,8991715,
994286191000000+-FX3979115499486chr2R6272591153734433537349101477,9,8991001,
994293217000000+-FX3979101064364874chr2R6272591153734433537349431510,364,8990968,
994262155000000+-FX395141702283700chr2R6272591153734526537349431417,283,8990968,
99611235000000++FX400065924120267chr2R6272591153987295539874421147,120,53987295,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.