Schema for xenoRefFlat
  Database: anoGam1    Primary Table: xenoRefFlat    Row Count: 129,635   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName kisvarchar(255) values Name of gene as it appears in genome browser.
name NM_001258891varchar(255) values Name of gene
chrom chr3Rvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 11106991int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 11129745int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 11106991int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 11129745int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 43int(10) unsigned range Number of exons
exonStarts 11106991,11107051,11107455,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 11107039,11107072,11107473,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        anoGam1.xenoMrna.qName (via xenoRefFlat.name)
      anoGam1.xenoRefGene.name (via xenoRefFlat.name)
      anoGam1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
kisNM_001258891chr3R+111069911112974511106991111297454311106991,11107051,11107455,11107652,11107936,11108251,11108386,11108504,11108669,11109411,11110329,11110749,11111100,11111277,11 ...11107039,11107072,11107473,11107682,11108056,11108284,11108400,11108522,11108682,11109422,11110341,11110761,11111154,11111316,11 ...
Glut1NM_001274309chr2L+452634914532264545263491453226371645263491,45263527,45263555,45264154,45283515,45283763,45284343,45285866,45286074,45286467,45286973,45288155,45302446,45302874,45 ...45263521,45263551,45263621,45264190,45283680,45283901,45284600,45285991,45286353,45286655,45287063,45288278,45302650,45303011,45 ...
CPSF3NM_174284chr2R+163980916413421639809164134211639809,1641342,
COPZ1NM_174282chr2L-33265112332659553326511233265955233265112,33265664,33265163,33265955,
H2bc6NM_001290530chr3L+38025096380254433802509638025441138025096,38025443,
H2bc6NM_001290530chr3L+37977063379774103797706337977408137977063,37977410,
H2bc6NM_001290530chrU+34840249348405963484024934840594134840249,34840596,
H2bc6NM_001290530chrU+19445719194459241944571919445924219445719,19445882,19445881,19445924,
H2bc6NM_001290530chr3L+37999497379998443799949737999842137999497,37999844,
CSTF2NM_001006433chr2R+57644713576459185764471357645918457644713,57644889,57645087,57645795,57644812,57645045,57645285,57645918,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.