Schema for all_est
  Database: caePb2    Primary Table: all_est    Row Count: 32,896   Data last updated: 2016-05-28
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 805smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 455int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 118int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 265int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName FC054792varchar(255) values Query sequence name
qSize 573int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 573int(10) unsigned range Alignment end position in query
tName chrUnvarchar(255) values Target sequence name
tSize 194283334int(10) unsigned range Target sequence size
tStart 28866867int(10) unsigned range Alignment start position in target
tEnd 28867705int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 205,368,longblob   Size of each block
qStarts 0,205,longblob   Start of each block in query.
tStarts 28866867,28867337,longblob   Start of each block in target.

Connected Tables and Joining Fields
        caePb2.all_mrna.qName (via all_est.qName)
      caePb2.estOrientInfo.name (via all_est.qName)
      caePb2.intronEst.qName (via all_est.qName)
      caePb2.xenoMrna.qName (via all_est.qName)
      caePb2.xenoRefGene.name (via all_est.qName)
      caePb2.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
80545501180001265+FC0547925730573chrUn19428333428866867288677052205,368,0,205,28866867,28867337,
820521144000148+FC0547935660566chrUn19428333430923850309244642137,429,0,137,30923850,30924035,
586559361320225361+FD5115087290729chrUn194283334151234152322621,216,172,149,164,5,0,22,238,410,560,724,151234,151326,151592,151811,152009,152317,
737413161021063803-FD5110538528851chrUn194283334258212262848868,264,59,55,7,67,149,164,1,69,334,393,457,464,531,680,258212,258324,258640,258767,258822,258847,262490,262684,
5888354250003524-FD5107888640864chrUn1942833343932533946414383,164,306,11,0,383,547,853,393253,393895,394323,394630,
5883935193000367+FD5101275910591chrUn19428333443535543601345,9,45,532,0,5,14,59,435355,435361,435371,435481,
58920848100000-FD5106552930293chrUn1942833345802015804941293,0,580201,
59483324302217255-FD5109558810881chrUn19428333412132441214359827,6,22,196,115,188,301,5,0,27,47,69,265,380,575,876,1213244,1213272,1213291,1213359,1213609,1213772,1214052,1214354,
59413047701111-FD5117362120212chrUn19428333412338561234068339,155,17,0,40,195,1233856,1233895,1234051,
595144613000000-FD5121812855285chrUn194283334131485013151301280,0,1314850,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.