Schema for estOrientInfo
  Database: caePb2    Primary Table: estOrientInfo    Row Count: 32,896   Data last updated: 2016-05-28
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 805smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
chromStart 28866867int(10) unsigned range Start position in chromosome
chromEnd 28867705int(10) unsigned range End position in chromosome
name FC054792varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 20smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        caePb2.all_est.qName (via estOrientInfo.name)
      caePb2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
805chrUn2886686728867705FC054792100200
820chrUn3092385030924464FC05479310000
586chrUn151234152322FD51150820000
73chrUn258212262848FD51105340000
588chrUn393253394641FD51078820000
588chrUn435355436013FD51012710000
589chrUn580201580494FD510655000022
594chrUn12132441214359FD51095530000
594chrUn12338561234068FD5117360002026
595chrUn13148501315130FD512181000190

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.