Schema for xenoMrna
  Database: canFam5    Primary Table: xenoMrna    Row Count: 4,937,394   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 175int(10) unsigned Number of bases that match that aren't repeats
misMatches 37int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 430int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 277int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JV461138varchar(255) Query sequence name
qSize 816int(10) unsigned Query sequence size
qStart 139int(10) unsigned Alignment start position in query
qEnd 781int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 122894117int(10) unsigned Target sequence size
tStart 84560int(10) unsigned Alignment start position in target
tEnd 85049int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 92,24,96,longblob Size of each block
qStarts 139,290,685,longblob Start of each block in query.
tStarts 84560,84719,84953,longblob Start of each block in target.

Connected Tables and Joining Fields
        canFam5.all_est.qName (via xenoMrna.qName)
      canFam5.all_mrna.qName (via xenoMrna.qName)
      canFam5.refGene.name (via xenoMrna.qName)
      canFam5.refSeqAli.qName (via xenoMrna.qName)
      canFam5.xenoRefFlat.name (via xenoMrna.qName)
      canFam5.xenoRefGene.name (via xenoMrna.qName)
      canFam5.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585175370024302277++JV461138816139781chr11228941178456085049392,24,96,139,290,685,84560,84719,84953,
585131330021851182+-JV063151563102451chr11228941179346893814378,51,35,102,362,416,122800303,122800563,122800614,
585131330021851182+-JV063152603142491chr11228941179346893814378,51,35,142,402,456,122800303,122800563,122800614,
585131330021851182+-JV06315355998447chr11228941179346893814378,51,35,98,358,412,122800303,122800563,122800614,
585131330021841182+-JV65354158064412chr11228941179346893814378,51,35,64,323,377,122800303,122800563,122800614,
733195442003044744770031+-LP8964058294108121chr1122894117934731671415116,207,73,117,134,59,98,80,120,110,66,73,109,136,133,70,88,185,63,55,48,17,13,13,5,28,10,49,155,129,81,138,156,171,12,52,43,59,1 ...10,53,260,333,450,734,793,891,971,1091,1201,1267,1340,1449,1608,1741,1811,1899,2114,2219,2278,2385,2403,2429,2495,2500,2529,2768 ...122726976,122726992,122759269,122761112,122762048,122763053,122765056,122767061,122768145,122769330,122770341,122770717,12277301 ...
5852264800151151+-EZ48166238845370chr112289411793732940572208,66,45,304,122800060,122800319,
5856117000000+-JU48803631232110chr11228941179373693814178,32,122800303,
58591800239236+-JU19758523424162chr11228941179406394198336,33,30,24,70,132,122799919,122799962,122800024,
58513820002711+-EZ462419420239404chr11228941179412594284386,36,36,239,328,368,122799833,122799919,122799956,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.